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GBX2 gastrulation brain homeobox 2 [ Sus scrofa (pig) ]

Gene ID: 100514608, updated on 17-Aug-2024

Summary

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Official Symbol
GBX2provided by VGNC
Official Full Name
gastrulation brain homeobox 2provided by VGNC
Primary source
VGNC:VGNC:96316
See related
Ensembl:ENSSSCG00000016319
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See GBX2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (136029393..136032568, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (150464293..150466933, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene uncharacterized LOC110257047 Neighboring gene uncharacterized LOC106506417 Neighboring gene ankyrin repeat and SOCS box containing 18 Neighboring gene IQ motif containing with AAA domain 1 Neighboring gene phosphatidylinositol transfer protein beta isoform pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein GBX-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    136029393..136032568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003133755.5 → XP_003133803.1  homeobox protein GBX-2

    UniProtKB/TrEMBL
    A0A4X1TAE5, F1SM11
    Related
    ENSSSCP00000017291.1, ENSSSCT00000017772.3
    Conserved Domains (1) summary
    pfam00046
    Location:250 → 303
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials