NR1D2 nuclear receptor subfamily 1 group D member 2 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: NR1D2
Gene description: nuclear receptor subfamily 1 group D member 2
Locus tag: CR201_G0006605
See related: Ensembl:ENSPPYG00000014064
Gene type: protein coding
RefSeq status: MODEL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	2	NC_085928.1 (130688762..130725740, complement)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	3	NC_071988.1 (118517952..118552619, complement)

Chromosome 2 - NC_085928.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Nr1d2 (e-PCR), detects polymorphism
- UniSTS:546583

SHGC-147591 (e-PCR)
- UniSTS:175896

STS-L31785 (e-PCR)
- UniSTS:62488

NR1D2_2031 (e-PCR)
- UniSTS:280872

SHGC-76776 (e-PCR)
- UniSTS:69473

D3S3941 (e-PCR)
- UniSTS:5732

D3S3477E (e-PCR)
- UniSTS:154042

SGC34561 (e-PCR)
- UniSTS:21444

RH47404 (e-PCR)
- UniSTS:21445

PMC115222P4 (e-PCR)
- UniSTS:270297

Nr1d2 (e-PCR), detects polymorphism
- UniSTS:507099

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclear receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in hormone-mediated signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nuclear receptor subfamily 1 group D member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

130688762..130725740 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_024245073.3 → XP_024100841.2 nuclear receptor subfamily 1 group D member 2 isoform X2
XM_063722167.1 → XP_063578237.1 nuclear receptor subfamily 1 group D member 2 isoform X3
XM_054552504.2 → XP_054408479.1 nuclear receptor subfamily 1 group D member 2 isoform X1
XM_009239274.3 → XP_009237549.2 nuclear receptor subfamily 1 group D member 2 isoform X3