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ZHX3 zinc fingers and homeoboxes 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100397864, updated on 10-Oct-2024

Summary

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Gene symbol
ZHX3
Gene description
zinc fingers and homeoboxes 3
See related
Ensembl:ENSCJAG00000018012
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ZHX3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (34518153..34687042, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (34432955..34595752, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene DNA topoisomerase I Neighboring gene uncharacterized LOC118153601 Neighboring gene phospholipase C gamma 1 Neighboring gene U1 spliceosomal RNA Neighboring gene lipin 3 Neighboring gene elastin microfibril interfacer 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc fingers and homeoboxes protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    34518153..34687042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054255363.1 → XP_054111338.1  zinc fingers and homeoboxes protein 3 isoform X1

  2. XM_054255357.1 → XP_054111332.1  zinc fingers and homeoboxes protein 3 isoform X1

  3. XM_054255350.1 → XP_054111325.1  zinc fingers and homeoboxes protein 3 isoform X1

  4. XM_054255354.1 → XP_054111329.1  zinc fingers and homeoboxes protein 3 isoform X1

  5. XM_054255361.1 → XP_054111336.1  zinc fingers and homeoboxes protein 3 isoform X1

  6. XM_054255362.1 → XP_054111337.1  zinc fingers and homeoboxes protein 3 isoform X1

  7. XM_054255348.1 → XP_054111323.1  zinc fingers and homeoboxes protein 3 isoform X1

  8. XM_054255346.1 → XP_054111321.1  zinc fingers and homeoboxes protein 3 isoform X1

  9. XM_054255364.1 → XP_054111339.1  zinc fingers and homeoboxes protein 3 isoform X1

  10. XM_054255358.1 → XP_054111333.1  zinc fingers and homeoboxes protein 3 isoform X1

  11. XM_054255351.1 → XP_054111326.1  zinc fingers and homeoboxes protein 3 isoform X1

  12. XM_054255352.1 → XP_054111327.1  zinc fingers and homeoboxes protein 3 isoform X1

  13. XM_054255359.1 → XP_054111334.1  zinc fingers and homeoboxes protein 3 isoform X1

  14. XM_054255349.1 → XP_054111324.1  zinc fingers and homeoboxes protein 3 isoform X1

  15. XM_054255347.1 → XP_054111322.1  zinc fingers and homeoboxes protein 3 isoform X1

  16. XM_054255360.1 → XP_054111335.1  zinc fingers and homeoboxes protein 3 isoform X1

  17. XM_054255355.1 → XP_054111330.1  zinc fingers and homeoboxes protein 3 isoform X1

  18. XM_054255353.1 → XP_054111328.1  zinc fingers and homeoboxes protein 3 isoform X1

  19. XM_054255356.1 → XP_054111331.1  zinc fingers and homeoboxes protein 3 isoform X1

  20. XM_054255365.1 → XP_054111340.1  zinc fingers and homeoboxes protein 3 isoform X1

  21. XM_054255369.1 → XP_054111344.1  zinc fingers and homeoboxes protein 3 isoform X3

  22. XM_035298623.2 → XP_035154514.1  zinc fingers and homeoboxes protein 3 isoform X2

    UniProtKB/TrEMBL
    F6QSD4, F7DI34
    Conserved Domains (4) summary
    smart00389
    Location:621 → 666
    HOX; Homeodomain
    cd00086
    Location:500 → 553
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam11569
    Location:850 → 892
    Homez; Homeodomain leucine-zipper encoding, Homez
    pfam18387
    Location:105 → 157
    zf_C2H2_ZHX; Zinc-fingers and homeoboxes C2H2 finger domain

  23. XM_035298622.2 → XP_035154513.1  zinc fingers and homeoboxes protein 3 isoform X2

    UniProtKB/TrEMBL
    F6QSD4, F7DI34
    Conserved Domains (4) summary
    smart00389
    Location:621 → 666
    HOX; Homeodomain
    cd00086
    Location:500 → 553
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam11569
    Location:850 → 892
    Homez; Homeodomain leucine-zipper encoding, Homez
    pfam18387
    Location:105 → 157
    zf_C2H2_ZHX; Zinc-fingers and homeoboxes C2H2 finger domain

  24. XM_017972050.3 → XP_017827539.1  zinc fingers and homeoboxes protein 3 isoform X2

    UniProtKB/TrEMBL
    F6QSD4, F7DI34
    Conserved Domains (4) summary
    smart00389
    Location:621 → 666
    HOX; Homeodomain
    cd00086
    Location:500 → 553
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam11569
    Location:850 → 892
    Homez; Homeodomain leucine-zipper encoding, Homez
    pfam18387
    Location:105 → 157
    zf_C2H2_ZHX; Zinc-fingers and homeoboxes C2H2 finger domain

  25. XM_054255368.1 → XP_054111343.1  zinc fingers and homeoboxes protein 3 isoform X3

  26. XM_054255366.1 → XP_054111341.1  zinc fingers and homeoboxes protein 3 isoform X3

  27. XM_017972054.3 → XP_017827543.1  zinc fingers and homeoboxes protein 3 isoform X2

    UniProtKB/TrEMBL
    F6QSD4, F7DI34
    Conserved Domains (4) summary
    smart00389
    Location:621 → 666
    HOX; Homeodomain
    cd00086
    Location:500 → 553
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam11569
    Location:850 → 892
    Homez; Homeodomain leucine-zipper encoding, Homez
    pfam18387
    Location:105 → 157
    zf_C2H2_ZHX; Zinc-fingers and homeoboxes C2H2 finger domain
Nucleotide Protein
Heading Accession and Version

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