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NR2C2 nuclear receptor subfamily 2 group C member 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100392011, updated on 10-Oct-2024

Summary

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Gene symbol
NR2C2
Gene description
nuclear receptor subfamily 2 group C member 2
See related
Ensembl:ENSCJAG00000017131
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See NR2C2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (65873344..65974568)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (66420259..66521597)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128929755 Neighboring gene FYVE, RhoGEF and PH domain containing 5 Neighboring gene small nuclear ribonucleoprotein G-like Neighboring gene uncharacterized LOC108588484 Neighboring gene mitochondrial ribosomal protein S25 Neighboring gene rabenosyn, RAB effector

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 2 group C member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    65873344..65974568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035273762.2 → XP_035129653.1  nuclear receptor subfamily 2 group C member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2R8NC69, F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 634
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  2. XM_035273765.2 → XP_035129656.1  nuclear receptor subfamily 2 group C member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2R8NC69, F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 634
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  3. XM_035273773.2 → XP_035129664.1  nuclear receptor subfamily 2 group C member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Conserved Domains (2) summary
    cd06952
    Location:380 → 601
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:131 → 217
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  4. XM_035273776.2 → XP_035129667.1  nuclear receptor subfamily 2 group C member 2 isoform X6

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Conserved Domains (2) summary
    cd06952
    Location:361 → 582
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:112 → 198
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  5. XM_017965121.3 → XP_017820610.1  nuclear receptor subfamily 2 group C member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2R8NC69, F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 634
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  6. XM_035273761.2 → XP_035129652.1  nuclear receptor subfamily 2 group C member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2R8NC69, F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 634
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  7. XM_035273769.2 → XP_035129660.1  nuclear receptor subfamily 2 group C member 2 isoform X3

    UniProtKB/TrEMBL
    F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:394 → 615
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:145 → 231
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  8. XM_035273772.2 → XP_035129663.1  nuclear receptor subfamily 2 group C member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Conserved Domains (2) summary
    cd06952
    Location:380 → 601
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:131 → 217
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  9. XM_035273775.2 → XP_035129666.1  nuclear receptor subfamily 2 group C member 2 isoform X6

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Conserved Domains (2) summary
    cd06952
    Location:361 → 582
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:112 → 198
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  10. XM_035273767.2 → XP_035129658.1  nuclear receptor subfamily 2 group C member 2 isoform X2

    UniProtKB/TrEMBL
    F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 598
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  11. XM_035273770.2 → XP_035129661.1  nuclear receptor subfamily 2 group C member 2 isoform X4

    UniProtKB/TrEMBL
    F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 592
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  12. XM_035273768.2 → XP_035129659.1  nuclear receptor subfamily 2 group C member 2 isoform X2

    UniProtKB/TrEMBL
    F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 598
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  13. XM_035273771.2 → XP_035129662.1  nuclear receptor subfamily 2 group C member 2 isoform X4

    UniProtKB/TrEMBL
    F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 592
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  14. XM_035273766.2 → XP_035129657.1  nuclear receptor subfamily 2 group C member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2R8NC69, F7HYJ2
    Conserved Domains (2) summary
    cd06952
    Location:413 → 634
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:164 → 250
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  15. XM_017965123.3 → XP_017820612.1  nuclear receptor subfamily 2 group C member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Conserved Domains (2) summary
    cd06952
    Location:380 → 601
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:131 → 217
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  16. XM_002758659.5 → XP_002758705.1  nuclear receptor subfamily 2 group C member 2 isoform X6

    See identical proteins and their annotated locations for XP_002758705.1

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Related
    ENSCJAP00000031520.2
    Conserved Domains (2) summary
    cd06952
    Location:361 → 582
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:112 → 198
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

  17. XM_054245970.1 → XP_054101945.1  nuclear receptor subfamily 2 group C member 2 isoform X5

  18. XM_035273777.2 → XP_035129668.1  nuclear receptor subfamily 2 group C member 2 isoform X6

    UniProtKB/TrEMBL
    A0A8I3W5Q4
    Conserved Domains (2) summary
    cd06952
    Location:361 → 582
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:112 → 198
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

RNA

  1. XR_004734122.2 RNA Sequence

  2. XR_004734125.2 RNA Sequence

  3. XR_004734123.2 RNA Sequence

  4. XR_004734124.2 RNA Sequence

Nucleotide Protein
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