U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARNT aryl hydrocarbon receptor nuclear translocator [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100227939, updated on 13-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
ARNT
Gene description
aryl hydrocarbon receptor nuclear translocator
See related
Ensembl:ENSTGUG00000004647
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ARNT in Genome Data Viewer
Location:
chromosome: 25
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 25 NC_044237.2 (1969222..1988312, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 25 NC_045023.1 (1951940..1972517, complement)

Chromosome 25 - NC_044237.2Genomic Context describing neighboring genes Neighboring gene extracellular matrix protein 1 Neighboring gene cathepsin K Neighboring gene cortexin domain containing 2 Neighboring gene uncharacterized LOC115498447 Neighboring gene SET domain bifurcated histone lysine methyltransferase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: aryl hydrocarbon receptor nuclear translocator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044237.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    1969222..1988312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002193845.6 → XP_002193881.2  LOW QUALITY PROTEIN: aryl hydrocarbon receptor nuclear translocator

    UniProtKB/TrEMBL
    A0A674HT06
    Related
    ENSTGUP00000037631.1
    Conserved Domains (4) summary
    PHA03247
    Location:486 → 773
    PHA03247; large tegument protein UL36; Provisional
    pfam00989
    Location:163 → 290
    PAS; PAS fold
    pfam14598
    Location:383 → 483
    PAS_11; PAS domain
    cd18947
    Location:86 → 150
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.