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PTMA prothymosin alpha [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100173377, updated on 26-Mar-2024

Summary

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Gene symbol
PTMA
Gene description
prothymosin alpha
Locus tag
CR201_G0033213
See related
Ensembl:ENSPPYG00000032471
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See PTMA in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 11 NC_071996.2 (135264126..135269202)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 2B NC_071987.1 (132620378..132625643)

Chromosome 11 - NC_071996.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129058162 Neighboring gene uncharacterized LOC129058163 Neighboring gene testis expressed 44 Neighboring gene phosphodiesterase 6D Neighboring gene U6 spliceosomal RNA Neighboring gene COP9 signalosome subunit 7B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469J2219

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prothymosin alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001132923.1 → NP_001126395.1  prothymosin alpha

    See identical proteins and their annotated locations for NP_001126395.1

    Status: PROVISIONAL

    Source sequence(s)
    CR860228
    UniProtKB/Swiss-Prot
    Q5R790
    UniProtKB/TrEMBL
    A0A2J8TQB4, H2NF41
    Related
    ENSPPYP00000038871.1, ENSPPYT00000055028.1
    Conserved Domains (1) summary
    pfam03247
    Location:2 → 109
    Prothymosin; Prothymosin/parathymosin family

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071996.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    135264126..135269202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024242981.3 → XP_024098749.1  prothymosin alpha isoform X3

    UniProtKB/TrEMBL
    A0A2J8TQD8, A0A8I5TC18, H2NF41
    Related
    ENSPPYP00000035686.1
    Conserved Domains (1) summary
    pfam03247
    Location:2 → 110
    Prothymosin; Prothymosin/parathymosin family

  2. XM_063712502.1 → XP_063568572.1  prothymosin alpha isoform X1

  3. XM_063712503.1 → XP_063568573.1  prothymosin alpha isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R790.3 GenPept UniProtKB/Swiss-Prot:Q5R790

Gene LinkOut

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