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MAFF MAF bZIP transcription factor F [ Sus scrofa (pig) ]

Gene ID: 100156484, updated on 17-Aug-2024

Summary

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Official Symbol
MAFFprovided by VGNC
Official Full Name
MAF bZIP transcription factor Fprovided by VGNC
Primary source
VGNC:VGNC:89947
See related
Ensembl:ENSSSCG00000030165
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 13.5), psoas major muscle (RPKM 12.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MAFF in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (9683651..9696128, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (6966177..6978613, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene casein kinase 1 epsilon Neighboring gene transmembrane protein 184B Neighboring gene phospholipase A2 group VI Neighboring gene BAR/IMD domain containing adaptor protein 2 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of epidermal cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MafF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    9683651..9696128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001924465.4 → XP_001924500.1  transcription factor MafF isoform X2

    See identical proteins and their annotated locations for XP_001924500.1

    UniProtKB/TrEMBL
    A0A4X1VLW8, A0A8D1VA03, F1SKP5
    Related
    ENSSSCP00000024532.3, ENSSSCT00000028972.5
    Conserved Domains (1) summary
    cd14717
    Location:47 → 115
    bZIP_Maf_small; Basic leucine zipper (bZIP) domain of small musculoaponeurotic fibrosarcoma (Maf) proteins: a DNA-binding and dimerization domain

  2. XM_021091498.1 → XP_020947157.1  transcription factor MafF isoform X2

    UniProtKB/TrEMBL
    A0A4X1VLW8, A0A8D1VA03, F1SKP5
    Conserved Domains (1) summary
    cd14717
    Location:47 → 115
    bZIP_Maf_small; Basic leucine zipper (bZIP) domain of small musculoaponeurotic fibrosarcoma (Maf) proteins: a DNA-binding and dimerization domain

  3. XM_013988209.2 → XP_013843663.1  transcription factor MafF isoform X1

    UniProtKB/TrEMBL
    A0A8D1VA03
    Conserved Domains (2) summary
    cd14717
    Location:79 → 147
    bZIP_Maf_small; coiled coil [structural motif]
    pfam03131
    Location:56 → 147
    bZIP_Maf; bZIP Maf transcription factor
Nucleotide Protein
Heading Accession and Version

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