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gcg2 glucagon II [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100136748, updated on 14-Dec-2023

Summary

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Gene symbol
gcg2
Gene description
glucagon II
See related
Ensembl:ENSOMYG00000045476
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See gcg2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 7 NC_048571.1 (18108790..18111651)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 7 NC_035083.1 (12028353..12031093)

Chromosome 7 - NC_048571.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 7 Neighboring gene grancalcin Neighboring gene dipeptidyl peptidase 4 Neighboring gene adenylate cyclase 10 Neighboring gene sodium-driven chloride bicarbonate exchanger Neighboring gene T-box brain protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Trout and chicken proglucagon: alternative splicing generates mRNA transcripts encoding glucagon-like peptide 2. Irwin DM, et al. Mol Endocrinol, 1995 Mar. PMID 7776976
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucagon receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucagon-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124700.1 → NP_001118172.1  glucagon-2 precursor

    See identical proteins and their annotated locations for NP_001118172.1

    Status: PROVISIONAL

    Source sequence(s)
    U19914
    UniProtKB/Swiss-Prot
    Q91189, Q92168
    UniProtKB/TrEMBL
    A0A060WDT4
    Related
    ENSOMYP00000100554.2, ENSOMYT00000109098.2
    Conserved Domains (2) summary
    smart00070
    Location:90 → 116
    GLUCA; Glucagon like hormones
    pfam00123
    Location:137 → 163
    Hormone_2; Peptide hormone

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    18108790..18111651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036981857.1 → XP_036837752.1  glucagon-2 isoform X1

    UniProtKB/TrEMBL
    A0A060WDT4, A0A8C7WK45
    Conserved Domains (2) summary
    smart00070
    Location:90 → 116
    GLUCA; Glucagon like hormones
    pfam00123
    Location:137 → 163
    Hormone_2; Peptide hormone
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91189.1 GenPept UniProtKB/Swiss-Prot:Q91189

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials