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adra1a adrenergic, alpha-1A-, receptor [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100136682, updated on 14-Dec-2023

Summary

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Gene symbol
adra1a
Gene description
adrenergic, alpha-1A-, receptor
See related
Ensembl:ENSOMYG00000019142
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See adra1a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 11 NC_048575.1 (55138993..55156549)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 11 NC_035087.1 (52212247..52223022)

Chromosome 11 - NC_048575.1Genomic Context describing neighboring genes Neighboring gene protein turtle homolog A Neighboring gene CT030 protein Neighboring gene dihydropyrimidinase-related protein 2 Neighboring gene BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha1-adrenergic receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adenylate cyclase-activating adrenergic receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipase C-activating G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
adrenergic, alpha 1A, receptor
Names
alpha-1A adrenoreceptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124653.1 → NP_001118125.1  adrenergic, alpha 1A, receptor

    See identical proteins and their annotated locations for NP_001118125.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ278449
    UniProtKB/TrEMBL
    A0A060VTR1, Q2VA56
    Related
    ENSOMYP00000041413.2, ENSOMYT00000045200.2
    Conserved Domains (3) summary
    pfam00001
    Location:52 → 333
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl00630
    Location:264 → 360
    YdcF-like; YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been ...
    cl21561
    Location:44 → 212
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048575.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    55138993..55156549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036934615.1 → XP_036790510.1  adrenergic, alpha 1A, receptor isoform X1

    UniProtKB/TrEMBL
    A0A060VTR1, A0A8C7QTH5
    Conserved Domains (2) summary
    cd14964
    Location:37 → 63
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:36 → 344
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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