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LOC100136532 peroxisomal proliferator-activated receptor beta1A [ Salmo salar (Atlantic salmon) ]

Gene ID: 100136532, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100136532
Gene description
peroxisomal proliferator-activated receptor beta1A
See related
Ensembl:ENSSSAG00000017149
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
pparb1A
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Genomic context

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See LOC100136532 in Genome Data Viewer
Location:
chromosome: ssa22
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa22 NC_059463.1 (41617143..41671667)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa22 NC_027321.1 (41196926..41250750)

Chromosome ssa22 - NC_059463.1Genomic Context describing neighboring genes Neighboring gene achaete-scute homolog 5-like Neighboring gene differentially expressed in FDCP 6 homolog Neighboring gene inositol 1,4,5-triphosphate receptor associated 1-like Neighboring gene ribosomal protein L10a-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal proliferator-activated receptor beta1A
Names
peroxisome proliferator-activated receptor beta1A
ppar beta1A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123635.1 → NP_001117107.1  peroxisomal proliferator-activated receptor beta1A

    See identical proteins and their annotated locations for NP_001117107.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ416953
    UniProtKB/TrEMBL
    Q8JIT8
    Related
    ENSSSAP00000118755.2, ENSSSAT00000154037.2
    Conserved Domains (2) summary
    cd06932
    Location:170 → 442
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:69 → 152
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059463.1 Reference Ssal_v3.1

    Range
    41617143..41671667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045704996.1 → XP_045560952.1  peroxisomal proliferator-activated receptor beta1A isoform X2

  2. XM_045704995.1 → XP_045560951.1  peroxisomal proliferator-activated receptor beta1A isoform X1

    UniProtKB/TrEMBL
    A0A1S3P5T7
    Related
    ENSSSAP00000024179.1, ENSSSAT00000031479.2
    Conserved Domains (2) summary
    cd06932
    Location:263 → 535
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:162 → 245
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers

  3. XM_014167444.2 → XP_014022919.1  peroxisomal proliferator-activated receptor beta1A isoform X1

    UniProtKB/TrEMBL
    A0A1S3P5T7
    Conserved Domains (2) summary
    cd06932
    Location:263 → 535
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:162 → 245
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers

  4. XM_045704994.1 → XP_045560950.1  peroxisomal proliferator-activated receptor beta1A isoform X1

    UniProtKB/TrEMBL
    A0A1S3P5T7
    Conserved Domains (2) summary
    cd06932
    Location:263 → 535
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:162 → 245
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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