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fshr follicle stimulating hormone receptor [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135990, updated on 12-Sep-2024

Summary

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Gene symbol
fshr
Gene description
follicle stimulating hormone receptor
See related
Ensembl:ENSOMYG00000006788
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See fshr in Genome Data Viewer
Location:
chromosome: 20
Exon count:
13
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 20 NC_048584.1 (11624909..11634813, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 20 NC_035096.1 (10500660..10510315, complement)

Chromosome 20 - NC_048584.1Genomic Context describing neighboring genes Neighboring gene mutS homolog 2 (E. coli) Neighboring gene F-box only protein 11 Neighboring gene neurexin 1a Neighboring gene inositol polyphosphate multikinase b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables follicle-stimulating hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thyroid-stimulating hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in follicle-stimulating hormone signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in male gonad development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
follicle-stimulating hormone receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124327.1 → NP_001117799.1  follicle-stimulating hormone receptor precursor

    See identical proteins and their annotated locations for NP_001117799.1

    Status: PROVISIONAL

    Source sequence(s)
    AF439405
    UniProtKB/TrEMBL
    A0A8C7NWJ3, A0A8C7VB23, Q71MM8
    Related
    ENSOMYP00000013724.2, ENSOMYT00000015195.2
    Conserved Domains (3) summary
    sd00033
    Location:57 → 77
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00001
    Location:358 → 606
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    pfam13306
    Location:90 → 224
    LRR_5; Leucine rich repeats (6 copies)

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048584.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    11624909..11634813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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