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ar-beta androgen receptor beta [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135789, updated on 14-Dec-2023

Summary

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Gene symbol
ar-beta
Gene description
androgen receptor beta
See related
Ensembl:ENSOMYG00000013733
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See ar-beta in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (38178704..38230238)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (34079043..34127965)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110533835 Neighboring gene tumor necrosis factor receptor superfamily member 27 Neighboring gene oligophrenin-1 Neighboring gene protein YIPF6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two distinct isoforms of cDNA encoding rainbow trout androgen receptors. Takeo J, et al. J Biol Chem, 1999 Feb 26. PMID 10026186
  2. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Berthelot C, et al. Nat Commun, 2014 Apr 22. PMID 24755649, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in male gonad development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
androgen receptor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124185.1 → NP_001117657.1  androgen receptor beta

    See identical proteins and their annotated locations for NP_001117657.1

    Status: PROVISIONAL

    Source sequence(s)
    AB012096
    UniProtKB/TrEMBL
    A0A8C7Q2W5, O93245
    Related
    ENSOMYP00000030994.1, ENSOMYT00000033794.2
    Conserved Domains (2) summary
    cd07173
    Location:492 → 573
    NR_DBD_AR; DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers
    cl11397
    Location:608 → 852
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    38178704..38230238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021617169.2 → XP_021472844.1  androgen receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A8C7Q2W5, O93245
    Conserved Domains (2) summary
    cd07173
    Location:492 → 573
    NR_DBD_AR; DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers
    cl11397
    Location:608 → 852
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_021617170.2 → XP_021472845.1  androgen receptor beta isoform X2

    Conserved Domains (2) summary
    cd07173
    Location:9 → 90
    NR_DBD_AR; DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers
    cl11397
    Location:125 → 369
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein
Heading Accession and Version

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