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Rfx regulatory transcription factor Rfx [ Nasonia vitripennis (jewel wasp) ]

Gene ID: 100121130, updated on 10-Oct-2024

Summary

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Gene symbol
Rfx
Gene description
regulatory transcription factor Rfx
See related
NASONIABASE:NV16418
Gene type
protein coding
RefSeq status
MODEL
Organism
Nasonia vitripennis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
Orthologs
fruit fly honey bee all
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Genomic context

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See Rfx in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
104 current Nvit_psr_1.1 (GCF_009193385.2) 1 Unlocalized Scaffold NC_045757.1 (14923574..14937319, complement)
103 previous assembly Nvit_psr_1 (GCF_009193385.1) 1 Unlocalized Scaffold NW_022279592.1 (8145831..8159577)

Chromosome 1 - NC_045757.1Genomic Context describing neighboring genes Neighboring gene N-acetylglucosamine-1-phosphate transferase subunits alpha and beta Neighboring gene non-canonical poly(A) RNA polymerase protein Trf4-1 Neighboring gene traB domain-containing protein Neighboring gene probable histone-lysine N-methyltransferase set-23 Neighboring gene sorting nexin-7 Neighboring gene uncharacterized LOC100121054 Neighboring gene uncharacterized LOC116417218

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nvit_psr_1.1

Genomic

  1. NC_045757.1 Reference Nvit_psr_1.1

    Range
    14923574..14937319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016985552.3 → XP_016841041.1  DNA-binding protein RFX2 isoform X1

    UniProtKB/TrEMBL
    A0A7M7IQ53

  2. XM_016985562.3 → XP_016841051.1  DNA-binding protein RFX2 isoform X3

    UniProtKB/TrEMBL
    A0A7M7IRE0

  3. XM_016985557.3 → XP_016841046.1  DNA-binding protein RFX2 isoform X2

    UniProtKB/TrEMBL
    A0A7M7IU33

  4. XM_016985575.3 → XP_016841064.1  DNA-binding protein RFX2 isoform X9

    UniProtKB/TrEMBL
    A0A7M7IYC1

  5. XM_008211001.4 → XP_008209223.1  DNA-binding protein RFX2 isoform X5

    UniProtKB/TrEMBL
    A0A7M7HBV1
    Conserved Domains (2) summary
    pfam02257
    Location:409 → 481
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:186 → 324
    RFX1_trans_act; RFX1 transcription activation region

  6. XM_016985564.3 → XP_016841053.1  DNA-binding protein RFX2 isoform X4

    UniProtKB/TrEMBL
    A0A7M7IZU5

  7. XM_031929066.2 → XP_031784926.1  DNA-binding protein RFX2 isoform X6

    UniProtKB/TrEMBL
    A0A7M7QBJ9
    Conserved Domains (2) summary
    pfam02257
    Location:404 → 476
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:173 → 305
    RFX1_trans_act; RFX1 transcription activation region

  8. XM_032598671.1 → XP_032454562.1  DNA-binding protein RFX2 isoform X11

    UniProtKB/TrEMBL
    A0A7M7QW05
    Conserved Domains (2) summary
    pfam02257
    Location:354 → 427
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:173 → 310
    RFX1_trans_act; RFX1 transcription activation region

  9. XM_032598672.1 → XP_032454563.1  DNA-binding protein RFX2 isoform X12

    UniProtKB/TrEMBL
    A0A7M7QY67
    Conserved Domains (2) summary
    pfam02257
    Location:349 → 422
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:173 → 305
    RFX1_trans_act; RFX1 transcription activation region

  10. XM_016985570.3 → XP_016841059.1  DNA-binding protein RFX2 isoform X7

    UniProtKB/TrEMBL
    A0A7M7ITP6

  11. XM_032598687.1 → XP_032454578.1  DNA-binding protein RFX2 isoform X16

    UniProtKB/TrEMBL
    A0A7M7QU48

  12. XM_032598675.1 → XP_032454566.1  DNA-binding protein RFX2 isoform X13

    UniProtKB/TrEMBL
    A0A7M7QU45
    Conserved Domains (2) summary
    pfam02257
    Location:335 → 407
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:84 → 236
    RFX1_trans_act; RFX1 transcription activation region

  13. XM_031929081.2 → XP_031784941.1  DNA-binding protein RFX2 isoform X14

    UniProtKB/TrEMBL
    A0A7M7QBD0
    Conserved Domains (3) summary
    COG5295
    Location:31 → 307
    Hia; Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    pfam02257
    Location:304 → 379
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:84 → 216
    RFX1_trans_act; RFX1 transcription activation region

  14. XM_032598684.1 → XP_032454575.1  DNA-binding protein RFX2 isoform X15

    UniProtKB/TrEMBL
    A0A7M7QY74
    Conserved Domains (2) summary
    pfam02257
    Location:265 → 338
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:84 → 221
    RFX1_trans_act; RFX1 transcription activation region

  15. XM_016985578.3 → XP_016841067.1  DNA-binding protein RFX2 isoform X10

    UniProtKB/TrEMBL
    A0A7M7IU41

  16. XM_032598677.1 → XP_032454568.1  DNA-binding protein RFX2 isoform X13

    UniProtKB/TrEMBL
    A0A7M7QU45
    Conserved Domains (2) summary
    pfam02257
    Location:335 → 407
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:84 → 236
    RFX1_trans_act; RFX1 transcription activation region

  17. XM_032598680.1 → XP_032454571.1  DNA-binding protein RFX2 isoform X13

    UniProtKB/TrEMBL
    A0A7M7QU45
    Conserved Domains (2) summary
    pfam02257
    Location:335 → 407
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:84 → 236
    RFX1_trans_act; RFX1 transcription activation region

  18. XM_031929071.2 → XP_031784931.1  DNA-binding protein RFX2 isoform X8

    UniProtKB/TrEMBL
    A0A7M7QG12
    Conserved Domains (2) summary
    pfam02257
    Location:376 → 448
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:125 → 277
    RFX1_trans_act; RFX1 transcription activation region

  19. XM_032598678.1 → XP_032454569.1  DNA-binding protein RFX2 isoform X13

    UniProtKB/TrEMBL
    A0A7M7QU45
    Conserved Domains (2) summary
    pfam02257
    Location:335 → 407
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:84 → 236
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein Strain
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