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ZFHX3 zinc finger homeobox 3 [ Equus caballus (horse) ]

Gene ID: 100054244, updated on 17-Aug-2024

Summary

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Official Symbol
ZFHX3provided by VGNC
Official Full Name
zinc finger homeobox 3provided by VGNC
Primary source
VGNC:VGNC:25215
See related
Ensembl:ENSECAG00000022984
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ZFHX3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (21351815..21926319)

Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106782959 Neighboring gene uncharacterized LOC111772784 Neighboring gene uncharacterized LOC111772783 Neighboring gene uncharacterized LOC102149407 Neighboring gene uncharacterized LOC111772785 Neighboring gene uncharacterized LOC111772786

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009146.3 Chromosome 3 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger homeobox protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009146.3 Reference EquCab3.0 Primary Assembly

    Range
    21351815..21926319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023637235.1 → XP_023493003.1  zinc finger homeobox protein 3

    UniProtKB/TrEMBL
    A0A9L0RMC8, F6UNK4
    Related
    ENSECAP00000020443.3, ENSECAT00000024600.4
    Conserved Domains (8) summary
    smart00389
    Location:2156 → 2212
    HOX; Homeodomain
    sd00017
    Location:1555 → 1579
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1411 → 1431
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2655 → 2707
    Homeobox; Homeobox domain
    cl25496
    Location:3114 → 3199
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl25800
    Location:2069 → 2149
    GGN; Gametogenetin
    cl27820
    Location:2604 → 2748
    Abdominal-A; Homeobox protein
    cl28087
    Location:2018 → 2614
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  2. XM_005608377.3 → XP_005608434.1  zinc finger homeobox protein 3

    UniProtKB/TrEMBL
    A0A9L0RMC8, F6UNK4
    Related
    ENSECAP00000065058.1, ENSECAT00000143685.1
    Conserved Domains (8) summary
    smart00389
    Location:2156 → 2212
    HOX; Homeodomain
    sd00017
    Location:1555 → 1579
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1411 → 1431
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2655 → 2707
    Homeobox; Homeobox domain
    cl25496
    Location:3114 → 3199
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl25800
    Location:2069 → 2149
    GGN; Gametogenetin
    cl27820
    Location:2604 → 2748
    Abdominal-A; Homeobox protein
    cl28087
    Location:2018 → 2614
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  3. XM_023637236.1 → XP_023493004.1  zinc finger homeobox protein 3

    UniProtKB/TrEMBL
    A0A9L0RMC8, F6UNK4
    Conserved Domains (8) summary
    smart00389
    Location:2156 → 2212
    HOX; Homeodomain
    sd00017
    Location:1555 → 1579
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1411 → 1431
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2655 → 2707
    Homeobox; Homeobox domain
    cl25496
    Location:3114 → 3199
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl25800
    Location:2069 → 2149
    GGN; Gametogenetin
    cl27820
    Location:2604 → 2748
    Abdominal-A; Homeobox protein
    cl28087
    Location:2018 → 2614
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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