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SP6 Sp6 transcription factor [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100019893, updated on 8-May-2024

Summary

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Gene symbol
SP6
Gene description
Sp6 transcription factor
See related
EnsemblRapid:ENSMODG00000069704
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See SP6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 2 NC_077228.1 (199252137..199258399, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 2 NC_008802.1 (200124420..200130708, complement)

Chromosome 2 - NC_077228.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L10 Neighboring gene leucine rich repeat containing 46 Neighboring gene secernin 2 Neighboring gene Sp2 transcription factor Neighboring gene uncharacterized LOC103101315 Neighboring gene pyridoxamine 5'-phosphate oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077228.1 Reference mMonDom1.pri

    Range
    199252137..199258399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016430520.2 → XP_016286006.1  transcription factor Sp6

    UniProtKB/TrEMBL
    F6PHU9
    Related
    ENSMODP00000068576.1, ENSMODT00000123512.1
    Conserved Domains (4) summary
    COG5048
    Location:261 → 337
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:314 → 336
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:300 → 323
    zf-H2C2_2; Zinc-finger double domain

  2. XM_007482342.3 → XP_007482404.1  transcription factor Sp6

    See identical proteins and their annotated locations for XP_007482404.1

    UniProtKB/TrEMBL
    F6PHU9
    Related
    ENSMODP00000072653.1, ENSMODT00000101921.1
    Conserved Domains (4) summary
    COG5048
    Location:261 → 337
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:314 → 336
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:300 → 323
    zf-H2C2_2; Zinc-finger double domain

  3. XM_056816835.1 → XP_056672813.1  transcription factor Sp6

    UniProtKB/TrEMBL
    F6PHU9

  4. XM_007482343.3 → XP_007482405.1  transcription factor Sp6

    See identical proteins and their annotated locations for XP_007482405.1

    UniProtKB/TrEMBL
    F6PHU9
    Conserved Domains (4) summary
    COG5048
    Location:261 → 337
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:314 → 336
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:300 → 323
    zf-H2C2_2; Zinc-finger double domain

  5. XM_007482345.3 → XP_007482407.1  transcription factor Sp6

    See identical proteins and their annotated locations for XP_007482407.1

    UniProtKB/TrEMBL
    F6PHU9
    Related
    ENSMODP00000085340.1, ENSMODT00000142256.1
    Conserved Domains (4) summary
    COG5048
    Location:261 → 337
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:314 → 336
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:300 → 323
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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