U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TRM4 LONGIFOLIA protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843756, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TRM4
    Official Full Name
    LONGIFOLIA protein
    Primary source
    TAIR:AT1G74160
    Locus tag
    AT1G74160
    See related
    Araport:AT1G74160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9E11.1; F9E11_1; TON1 Recruiting Motif 4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRM4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (27885911..27891436)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Rhomboid-related intramembrane serine protease family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene receptor like protein 13 Neighboring gene receptor like protein 14 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3. Yang B, et al. New Phytol, 2019 Jan. PMID 30277578, Free PMC Article
    2. Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24. Lee YK, et al. Plant Mol Biol, 2018 May. PMID 29616436
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results indicate that TRM4 is essential for microtubule array organization and therefore correct cellulose orientation in the SCE cells, as well as the establishment of the subsequent mucilage architecture.
      Title: TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3.
    2. LONGIFOLIA related genes play an important role in polar cell elongation by changing turgor pressure and controlling the activation of XTH17 and XTH24. [LNG3]
      Title: Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_001334632.1
    NM_001334633.1
    NM_106076.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of monopolar cell growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within unidimensional cell growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LONGIFOLIA protein
    NP_177556.3
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27885911..27891436
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106076.4 → NP_177556.3  LONGIFOLIA protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177556.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WU87, A0A7G2E780, Q0WNQ5
      Conserved Domains (2) summary
      PTZ00108
      Location:423 → 653
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam14309
      Location:820 → 1002
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001334632.1 → NP_001320787.1  LONGIFOLIA protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQH5, A0A1P8ANX7

    3. NM_001334633.1 → NP_001320788.1  LONGIFOLIA protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQH5, A0A1P8ANX7
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.