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    neurofilament heavy protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843346, updated on 18-Sep-2024

    Summary

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    Official Full Name
    neurofilament heavy protein
    Primary source
    TAIR:AT1G70100
    Locus tag
    AT1G70100
    See related
    Araport:AT1G70100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20P5.17; F20P5_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (26402978..26406190)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene glucosyl transferase family 8 Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene transmembrane protein, putative (DUF1163)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084335.1
    NM_001334434.1
    NM_001334435.1
    NM_105678.4
    NM_179540.4
    NM_202389.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    neurofilament heavy protein
    NP_001077804.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3305 Blast hits to 2533 proteins in 359 species: Archae - 8; Bacteria - 641; Metazoa - 1288; Fungi - 248; Plants - 240; Viruses - 42; Other Eukaryotes - 838 (source: NCBI BLink).
    NP_564984.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryotes - 783 (source: NCBI BLink).
    NP_849871.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryotes - 783 (source: NCBI BLink).
    NP_974118.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26402978..26406190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105678.4 → NP_564984.1  neurofilament heavy protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564984.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O04535, Q3ECF2, Q94BQ6
      Conserved Domains (1) summary
      PTZ00108
      Location:180 → 403
      PTZ00108; DNA topoisomerase 2-like protein; Provisional

    2. NM_202389.4 → NP_974118.1  neurofilament heavy protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974118.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WR18, A0A654EMQ9, F4I3X3

    3. NM_001084335.1 → NP_001077804.1  neurofilament heavy protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077804.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WR18, A0A654EMQ9, B9DFN3
      Conserved Domains (1) summary
      PTZ00108
      Location:180 → 403
      PTZ00108; DNA topoisomerase 2-like protein; Provisional

    4. NM_179540.4 → NP_849871.2  neurofilament heavy protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849871.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O04535, Q3ECF2, Q94BQ6
      Conserved Domains (1) summary
      PTZ00108
      Location:180 → 403
      PTZ00108; DNA topoisomerase 2-like protein; Provisional

    5. NM_001334435.1 → NP_001321614.1  neurofilament heavy protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WR18, A0A654EMQ9, F4I3X3

    6. NM_001334434.1 → NP_001321615.1  neurofilament heavy protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O04535, Q3ECF2, Q94BQ6
    Nucleotide Protein
    Heading Accession and Version

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