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    tRNA (met) cytidine acetyltransferase, putative (DUF616) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841738, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA (met) cytidine acetyltransferase, putative (DUF616)
    Primary source
    TAIR:AT1G53040
    Locus tag
    AT1G53040
    See related
    Araport:AT1G53040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L10.10; F8L10_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (19764245..19767507, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cytochrome C oxidase copper chaperone (COX17) Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene Legume lectin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333571.1
    NM_001333572.1
    NM_001333573.1
    NM_001333574.1
    NM_104183.5
    NM_202284.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA (met) cytidine acetyltransferase, putative (DUF616)
    NP_175712.2
    • Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 330 Blast hits to 330 proteins in 44 species: Archae - 14; Bacteria - 43; Metazoa - 2; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    NP_974013.1
    • Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19764245..19767507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202284.3 → NP_974013.1  tRNA (met) cytidine acetyltransferase, putative (DUF616) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974013.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGZ0, A0A384LEH8, A0A654EJP6, Q0WNW2
      Conserved Domains (1) summary
      pfam04765
      Location:179 → 482
      DUF616; Protein of unknown function (DUF616)

    2. NM_104183.5 → NP_175712.2  tRNA (met) cytidine acetyltransferase, putative (DUF616) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175712.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGZ0, A0A384LEH8, A0A654EJP6, Q0WNW2
      Conserved Domains (1) summary
      pfam04765
      Location:179 → 482
      DUF616; Protein of unknown function (DUF616)

    3. NM_001333571.1 → NP_001320226.1  tRNA (met) cytidine acetyltransferase, putative (DUF616) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM90, A0A654EJP6
      Conserved Domains (1) summary
      pfam04765
      Location:179 → 479
      DUF616; Protein of unknown function (DUF616)

    4. NM_001333572.1 → NP_001320223.1  tRNA (met) cytidine acetyltransferase, putative (DUF616) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM90, A0A654EJP6
      Conserved Domains (1) summary
      pfam04765
      Location:179 → 479
      DUF616; Protein of unknown function (DUF616)

    5. NM_001333573.1 → NP_001320224.1  tRNA (met) cytidine acetyltransferase, putative (DUF616) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM59

    6. NM_001333574.1 → NP_001320225.1  tRNA (met) cytidine acetyltransferase, putative (DUF616) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGZ0, A0A384LEH8, A0A654EJP6, Q0WNW2
      Conserved Domains (1) summary
      pfam04765
      Location:179 → 482
      DUF616; Protein of unknown function (DUF616)
    Nucleotide Protein
    Heading Accession and Version

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