RING/U-box superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: RING/U-box superfamily protein
Primary source: TAIR:AT1G49200
Locus tag: AT1G49200
See related: Araport:AT1G49200
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F27J15.33
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 1

Sequence:: Chromosome: 1; NC_003070.9 (18198227..18199168)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that a group of six genes, duplC-ATLs, ATL75|At1g49200, ATL76|At1g49210, ATL10|At1g49220, ATL78|At1g49230, |ATL77|At3g18773 and |ATL81|At3g18777 were studied.
Title: The fate of tandemly duplicated genes assessed by the expression analysis of a group of Arabidopsis thaliana RING-H2 ubiquitin ligase genes of the ATL family.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_103810.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: RING/U-box superfamily protein

NP_175346.1

RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 8744 Blast hits to 8720 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2273; Fungi - 539; Plants - 4805; Viruses - 46; Other Eukaryotes - 1081 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

18198227..18199168

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103810.2 → NP_175346.1 RING/U-box superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_175346.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q94BY6, Q9M9C0

UniProtKB/TrEMBL

A0A178WPN3, A0A5S9WN59, A0A654EIA2

Conserved Domains (1) summary

cd16461
Location:135 → 178

RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins