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    YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841048, updated on 18-Sep-2024

    Summary

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    Official Full Name
    YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
    Primary source
    TAIR:AT1G44835
    Locus tag
    AT1G44835
    See related
    Araport:AT1G44835
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12C22.11; T12C22_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (16939692..16942558)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peptidase M20/M25/M40 family protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant-exclusive domain of trans-editing enzyme ProXp-ala confers dimerization and enhanced tRNA binding. Byun JK, et al. J Biol Chem, 2022 Sep. PMID 35835222, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Plant-exclusive domain of trans-editing enzyme ProXp-ala confers dimerization and enhanced tRNA binding.
      Title: Plant-exclusive domain of trans-editing enzyme ProXp-ala confers dimerization and enhanced tRNA binding.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036072.2
    NM_103565.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
    NP_001031149.1
    • YbaK/aminoacyl-tRNA synthetase-associated domain; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase-associated domain (InterPro:IPR007214); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175105.2
    • YbaK/aminoacyl-tRNA synthetase-associated domain; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase-associated domain (InterPro:IPR007214); Has 1390 Blast hits to 1389 proteins in 506 species: Archae - 0; Bacteria - 937; Metazoa - 52; Fungi - 8; Plants - 40; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16939692..16942558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103565.6 → NP_175105.2  YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175105.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0WU71, Q8GXG9
      Conserved Domains (1) summary
      cd04335
      Location:5 → 162
      PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...

    2. NM_001036072.2 → NP_001031149.1  YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031149.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HPK3, Q0WU71
      Conserved Domains (1) summary
      cd04335
      Location:5 → 162
      PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...
    Nucleotide Protein
    Heading Accession and Version

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