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    glycine-rich protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839662, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycine-rich protein
    Primary source
    TAIR:AT1G27695
    Locus tag
    AT1G27695
    See related
    Araport:AT1G27695
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (9639024..9640204)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ADPGLC-PPase large subunit Neighboring gene lipase, putative (DUF620) Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene Glycine-rich protein family Neighboring gene TBP-associated factor 4B Neighboring gene salt tolerance zinc finger

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TGD5 is required for normal morphogenesis of non-mesophyll plastids, but not mesophyll chloroplasts, in Arabidopsis. Itoh RD, et al. Plant J, 2021 Jul. PMID 33884686
    2. Arabidopsis TRIGALACTOSYLDIACYLGLYCEROL5 Interacts with TGD1, TGD2, and TGD4 to Facilitate Lipid Transfer from the Endoplasmic Reticulum to Plastids. Fan J, et al. Plant Cell, 2015 Oct. PMID 26410300, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results suggest that TGD5 facilitates lipid transfer from the outer to the inner plastid envelope by bridging TGD4 with the TGD1,2,3 transporter complex.
      Title: Arabidopsis TRIGALACTOSYLDIACYLGLYCEROL5 Interacts with TGD1, TGD2, and TGD4 to Facilitate Lipid Transfer from the Endoplasmic Reticulum to Plastids.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036020.2
    NM_148489.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ER to chloroplast lipid transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within endoplasmic reticulum to chloroplast transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within guard cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid inner membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid outer membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intracellular anatomical structure IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich protein
    NP_001031097.1
    • glycine-rich protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_683330.1
    • glycine-rich protein; Has 5153 Blast hits to 886 proteins in 153 species: Archae - 32; Bacteria - 329; Metazoa - 3227; Fungi - 62; Plants - 1099; Viruses - 56; Other Eukaryotes - 348 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9639024..9640204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148489.3 → NP_683330.1  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683330.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VY77
      UniProtKB/TrEMBL
      A0A178WEP5, A0A5S9W610

    2. NM_001036020.2 → NP_001031097.1  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031097.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VY77
      UniProtKB/TrEMBL
      A0A178WEP5, A0A5S9W610
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY77.1

    Gene LinkOut

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