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    SPL10 squamosa promoter binding protein-like 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839626, updated on 7-Sep-2023

    Summary

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    Gene symbol
    SPL10
    Gene description
    squamosa promoter binding protein-like 10
    Primary source
    Araport:AT1G27370
    Locus tag
    AT1G27370
    See related
    TAIR:AT1G27370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L21.15; F17L21_15; squamosa promoter binding protein-like 10
    Summary
    In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development.
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    Genomic context

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    See SPL10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (9505112..9508542, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Ribosome associated membrane protein RAMP4 Neighboring gene squamosa promoter-like 11 Neighboring gene ROP-interactive CRIB motif-containing protein 2 Neighboring gene phosphoribosylformylglycinamidine synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses. Barrera-Rojas CH, et al. J Exp Bot, 2020 Jan 23. PMID 31642910
    2. Regulation of flowering time by SPL10/MED25 module in Arabidopsis. Yao T, et al. New Phytol, 2019 Oct. PMID 31125430
    3. miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79. Gao R, et al. Front Plant Sci, 2017. PMID 29354153, Free PMC Article
    4. WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering. Ma Z, et al. J Integr Plant Biol, 2020 Nov. PMID 32396254
    5. Arabidopsis SBP-box genes SPL10, SPL11 and SPL2 control morphological change in association with shoot maturation in the reproductive phase. Shikata M, et al. Plant Cell Physiol, 2009 Dec. PMID 19880401

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering.
      Title: WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering.
    2. miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses.
      Title: miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses.
    3. SPL10 recruits MED25 to the promoters of target genes to regulate flowering time.
      Title: Regulation of flowering time by SPL10/MED25 module in Arabidopsis.
    4. SPL10, SPL11 and SPL2 regulate morphological traits of cauline leaves and flowers, and control shoot maturation not only in the vegetative phase but also in the reproductive phase.
      Title: Arabidopsis SBP-box genes SPL10, SPL11 and SPL2 control morphological change in association with shoot maturation in the reproductive phase.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001036019.3
    NM_001084136.1
    NM_001332754.1
    NM_001332756.1
    NM_102499.4
    NM_202192.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf shaping IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of auxin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    squamosa promoter binding protein-like 10
    NP_001031096.2
    • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001319090.1
    • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_174057.2
    • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973921.1
    • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9505112..9508542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332755.1 → NP_001323271.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
      UniProtKB/TrEMBL
      A0A178WJ37, A0A5S9W4F2, A0A654EEA5
      Conserved Domains (1) summary
      pfam03110
      Location:176 → 250
      SBP; SBP domain

    2. NM_202192.2 → NP_973921.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973921.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
      UniProtKB/TrEMBL
      A0A178WJ37, A0A5S9W4F2, A0A654EEA5
      Conserved Domains (1) summary
      pfam03110
      Location:176 → 250
      SBP; SBP domain

    3. NM_001036019.3 → NP_001031096.2  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031096.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
      UniProtKB/TrEMBL
      A0A178WJ37, A0A5S9W4F2, A0A654EEA5
      Conserved Domains (1) summary
      pfam03110
      Location:176 → 250
      SBP; SBP domain

    4. NM_102499.4 → NP_174057.2  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174057.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
      UniProtKB/TrEMBL
      A0A178WJ37, A0A5S9W4F2, A0A654EEA5
      Conserved Domains (1) summary
      pfam03110
      Location:176 → 250
      SBP; SBP domain

    5. NM_001332756.1 → NP_001323272.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWI8, A0A654EEA5

    6. NM_001332754.1 → NP_001319090.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
      UniProtKB/TrEMBL
      A0A178WJ37, A0A5S9W4F2, A0A654EEA5
      Conserved Domains (1) summary
      pfam03110
      Location:176 → 250
      SBP; SBP domain

    7. NM_001084136.1 → NP_001077605.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077605.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
      UniProtKB/TrEMBL
      A0A178WJ37, A0A5S9W4F2, A0A654EEA5
      Conserved Domains (1) summary
      pfam03110
      Location:176 → 250
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S9L0.2

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