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    CNGC10 cyclic nucleotide gated channel 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838832, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CNGC10
    Official Full Name
    cyclic nucleotide gated channel 10
    Primary source
    TAIR:AT1G01340
    Locus tag
    AT1G01340
    See related
    Araport:AT1G01340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ACBK1; ATCNGC10; cyclic nucleotide gated channel 10; F6F3.13; F6F3_13
    Summary
    member of Cyclic nucleotide gated channel family
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    Genomic context

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    See CNGC10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (132270..135924, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene auxin-responsive endogenous peptide protein Neighboring gene Zinc finger (CCCH-type/C3HC4-type RING finger) family protein Neighboring gene Putative endonuclease or glycosyl hydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cyclic nucleotide gated channel 10 negatively regulates salt tolerance by mediating Na+ transport in Arabidopsis. Jin Y, et al. J Plant Res, 2015 Jan. PMID 25416933
    2. The cyclic nucleotide-gated channel AtCNGC10 transports Ca2+ and Mg2+ in Arabidopsis. Guo KM, et al. Physiol Plant, 2010 Jul 1. PMID 20210874
    3. The cyclic nucleotide-gated channel, AtCNGC10, influences salt tolerance in Arabidopsis. Guo KM, et al. Physiol Plant, 2008 Nov. PMID 18823330
    4. The cyclic nucleotide gated cation channel AtCNGC10 traffics from the ER via Golgi vesicles to the plasma membrane of Arabidopsis root and leaf cells. Christopher DA, et al. BMC Plant Biol, 2007 Sep 19. PMID 17877833, Free PMC Article
    5. Genome-Wide Identification and Characterization of Calcium Metabolism Related Gene Families in Arabidopsis thaliana and Their Regulation by Bacillus amyloliquefaciens Under High Calcium Stress. Gong J, et al. Front Plant Sci, 2021. PMID 34456948, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These data suggest that CNGC10 negatively regulates salt tolerance in A. thaliana and may be involved in mediating Na(+) transport.
      Title: Cyclic nucleotide gated channel 10 negatively regulates salt tolerance by mediating Na+ transport in Arabidopsis.
    2. AtCNGC10 is involved in in Ca2+ and Mg2+ transport, which, in turn, regulates K+ transport.
      Title: The cyclic nucleotide-gated channel AtCNGC10 transports Ca2+ and Mg2+ in Arabidopsis.
    3. The AtCNGC10 channel is involved in Na+ and K+ transport during cation uptake in roots and in long-distance transport.
      Title: The cyclic nucleotide-gated channel, AtCNGC10, influences salt tolerance in Arabidopsis.
    4. AtCNGC10 traffics from the endoplasmic reticulum via the Golgi apparatus and associated vesicles to the plasma membrane.
      Title: The cyclic nucleotide gated cation channel AtCNGC10 traffics from the ER via Golgi vesicles to the plasma membrane of Arabidopsis root and leaf cells.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001197956.2
    NM_100016.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to calcium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cyclic nucleotide gated channel 10
    NP_001184885.1
    • cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1).
    NP_563625.1
    • cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      132270..135924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197956.2 → NP_001184885.1  cyclic nucleotide gated channel 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184885.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LKL3, Q9LNJ0
      UniProtKB/TrEMBL
      A0A178W8D7, A0A5S9S075
      Conserved Domains (2) summary
      PLN03192
      Location:46 → 491
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:473 → 604
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    2. NM_100016.3 → NP_563625.1  cyclic nucleotide gated channel 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563625.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LNJ0
      Conserved Domains (4) summary
      COG0664
      Location:462 → 597
      Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
      cd00038
      Location:468 → 599
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      pfam00520
      Location:118 → 397
      Ion_trans; Ion transport protein
      cl18962
      Location:415 → 498
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LNJ0.2

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