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    Cation efflux family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838200, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cation efflux family protein
    Primary source
    TAIR:AT1G16310
    Locus tag
    AT1G16310
    See related
    Araport:AT1G16310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3O9.11; F3O9_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (5578265..5580730)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transglycosylase Neighboring gene glyceraldehyde-3-phosphate dehydrogenase of plastid 2 Neighboring gene plant/protein (DUF2358) Neighboring gene cyclin b3;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study reveals novel players in defense hormone crosstalk in Arabidopsis. Proietti S, et al. Plant Cell Environ, 2018 Oct. PMID 29852537, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332221.1
    NM_101497.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables monoatomic cation transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of jasmonic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of salicylic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Cation efflux family protein
    NP_173081.2
    • Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5578265..5580730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101497.4 → NP_173081.2  Cation efflux family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173081.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WU02, Q9SA30
      UniProtKB/TrEMBL
      A0A178W9I2, A0A5S9URV6
      Conserved Domains (1) summary
      cl30791
      Location:129 → 416
      FieF; Divalent metal cation (Fe/Co/Zn/Cd) transporter [Inorganic ion transport and metabolism]

    2. NM_001332221.1 → NP_001322068.1  Cation efflux family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASU5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WU02.1

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