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    protein-protein interaction regulator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838086, updated on 18-Sep-2024

    Summary

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    Official Full Name
    protein-protein interaction regulator family protein
    Primary source
    TAIR:AT1G15200
    Locus tag
    AT1G15200
    See related
    Araport:AT1G15200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.14; F9L1_14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (5228300..5231184, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene Fasciclin-like arabinogalactan family protein Neighboring gene pleiotropic drug resistance 7 Neighboring gene SAWADEE HOMEODOMAIN protein Neighboring gene cytochrome c biogenesis protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions. Bi Y, et al. Nat Commun, 2021 Feb 11. PMID 33574257, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001198070.1
    NM_001198071.1
    NM_001198072.1
    NM_101388.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    protein-protein interaction regulator family protein
    NP_001184999.1
    • protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786).
    NP_001185000.1
    • protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786).
    NP_001185001.1
    • protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786).
    NP_563965.1
    • protein-protein interaction regulator family protein; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786); Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10; Bacteria - 289; Metazoa - 2328; Fungi - 484; Plants - 229; Viruses - 50; Other Eukaryotes - 1940 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5228300..5231184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101388.4 → NP_563965.1  protein-protein interaction regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563965.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W864, A0A5S9UII1, Q9C5G2
      Conserved Domains (2) summary
      PTZ00121
      Location:65 → 361
      PTZ00121; MAEBL; Provisional
      pfam04696
      Location:157 → 288
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region

    2. NM_001198070.1 → NP_001184999.1  protein-protein interaction regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184999.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W864, F4HZI6
      Conserved Domains (1) summary
      pfam04696
      Location:157 → 293
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region

    3. NM_001198072.1 → NP_001185001.1  protein-protein interaction regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185001.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W864, F4HZI7
      Conserved Domains (1) summary
      pfam04696
      Location:157 → 335
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region

    4. NM_001198071.1 → NP_001185000.1  protein-protein interaction regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185000.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W864, A0A654E9Y9, F4HZI8
      Conserved Domains (1) summary
      pfam04696
      Location:157 → 326
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region
    Nucleotide Protein
    Heading Accession and Version

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