RPF1 RNA processing FACTOR [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Symbol: RPF1
Official Full Name: RNA processing FACTOR
Primary source: TAIR:AT1G12700
Locus tag: AT1G12700
See related: Araport:AT1G12700
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: RNA processing factor 1; T12C24.31; T12C24_31
Summary: Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5#Aeo-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5'-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.
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Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

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NM_001332041.1

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mitochondrial mRNA 5'-end processing	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within mitochondrial mRNA modification	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in mitochondrion	IMP Inferred from Mutant Phenotype more info	PubMed
located_in mitochondrion	ISM Inferred from Sequence Model more info

NP_001318989.1

ATP binding;nucleic acid binding;helicases; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123; Bacteria - 11324; Metazoa - 2691; Fungi - 2451; Plants - 63733; Viruses - 4; Other Eukaryotes - 4418 (source: NCBI BLink).

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The following sections contain reference sequences that belong to a specific genome build. Explain