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    RPS15A ribosomal protein S15A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837291, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPS15A
    Official Full Name
    ribosomal protein S15A
    Primary source
    TAIR:AT1G07770
    Locus tag
    AT1G07770
    See related
    Araport:AT1G07770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CYTOPLASMIC RIBOSOMAL PROTEIN S15A; F24B9.12; F24B9_12; ribosomal protein S15A
    Summary
    Encodes cytoplasmic ribosomal protein S15a.
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    Genomic context

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    See RPS15A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (2407411..2409791, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene tRNA-His Neighboring gene phosphoribosylanthranilate isomerase 1 Neighboring gene Histone superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide and protein sequences of a cytoplasmic ribosomal protein S15a gene from Arabidopsis thaliana. Bonham-Smith PC, et al. Plant Physiol, 1994 Sep. PMID 7972526, Free PMC Article
    2. Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Adams KL, et al. Plant Cell, 2002 Apr. PMID 11971146, Free PMC Article
    3. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    4. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    5. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001331728.1
    NM_100651.5
    NM_202054.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosolic ribosome HDA PubMed 
    located_in cytosolic ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    NOT located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein S15A
    NP_001318947.1
    • ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277; Bacteria - 1997; Metazoa - 434; Fungi - 223; Plants - 257; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
    NP_973783.1
    • ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2407411..2409791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331728.1 → NP_001318947.1  ribosomal protein S15A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P42798, Q7GD83
      UniProtKB/TrEMBL
      A0A178W5N5, A0A384KNV6, A0MES6, B9DI04
      Conserved Domains (1) summary
      PLN00146
      Location:1 → 130
      PLN00146; 40S ribosomal protein S15a; Provisional

    2. NM_100651.5 → NP_172256.1  ribosomal protein S15A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172256.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P42798, Q7GD83
      UniProtKB/TrEMBL
      A0A178W5N5, A0A384KNV6, A0MES6, B9DI04
      Conserved Domains (1) summary
      PLN00146
      Location:1 → 130
      PLN00146; 40S ribosomal protein S15a; Provisional

    3. NM_202054.3 → NP_973783.1  ribosomal protein S15A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973783.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P42798, Q7GD83
      UniProtKB/TrEMBL
      A0A178W5N5, A0A384KNV6, A0MES6, B9DI04
      Conserved Domains (1) summary
      PLN00146
      Location:1 → 130
      PLN00146; 40S ribosomal protein S15a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P42798.2

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