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    SIRANBP Pleckstrin homology (PH) domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837225, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SIRANBP
    Official Full Name
    Pleckstrin homology (PH) domain superfamily protein
    Primary source
    TAIR:AT1G07140
    Locus tag
    AT1G07140
    See related
    Araport:AT1G07140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10K1.15; F10K1_15; RAN-BINDING PROTEIN SIRANBP
    Summary
    Encodes a putative Ran-binding protein (siRanBP).
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    Genomic context

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    See SIRANBP in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2191679..2193836, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene glycine-rich protein Neighboring gene mitogen-activated protein kinase kinase kinase 13 Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. Haizel T, et al. Plant J, 1997 Jan. PMID 9025305
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100588.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) domain superfamily protein
    NP_172194.1
    • SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 2132 Blast hits to 1580 proteins in 275 species: Archae - 9; Bacteria - 76; Metazoa - 1014; Fungi - 369; Plants - 163; Viruses - 39; Other Eukaryotes - 462 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2191679..2193836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100588.4 → NP_172194.1  Pleckstrin homology (PH) domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172194.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04149, Q9LMK7, Q9XHS1
      UniProtKB/TrEMBL
      A0A178WG12, A0A5S9T1E7
      Conserved Domains (1) summary
      cd13179
      Location:25 → 155
      RanBD_RanBP1; Ran-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LMK7.1

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