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    ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837026, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604)
    Primary source
    TAIR:AT1G05280
    Locus tag
    AT1G05280
    See related
    Araport:AT1G05280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    YUP8H12.11; YUP8H12_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (1534830..1537602, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene TraB family protein Neighboring gene ncRNA Neighboring gene CCT motif family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331536.1
    NM_001331537.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604)
    NP_001318926.1
    • Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G15240.1); Has 523 Blast hits to 513 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 172; Plants - 273; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1534830..1537602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331536.1 → NP_001318926.1  ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBD7, F4I8P5

    2. NM_001331537.1 → NP_001321254.1  ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WD45, A0A1P8AQE7, A0A1W6AK02
      Conserved Domains (1) summary
      pfam04646
      Location:207 → 453
      DUF604; Protein of unknown function, DUF604
    Nucleotide Protein
    Heading Accession and Version

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