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    AT5G65440 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836669, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G65440
    Gene description
    uncharacterized protein
    Primary source
    Araport:AT5G65440
    Locus tag
    AT5G65440
    See related
    TAIR:AT5G65440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNA5.17; MNA5_17
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    Genomic context

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    See AT5G65440 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Sequence:
    Chromosome: 5; NC_003076.8 (26151333..26157099)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene general regulatory factor 8 Neighboring gene tRNA-Ser Neighboring gene ubiquitin-specific protease 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001126032.2
    NM_001203693.1
    NM_001345681.1
    NM_001345682.1
    NM_001345683.1
    NM_001345684.1
    NM_001345685.1
    NM_001345686.1
    NM_125942.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001119504.1
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190622.1
    • unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1).
    NP_201347.2
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26151333..26157099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001126032.2 → NP_001119504.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119504.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIN1, B3H553

    2. NM_001345681.1 → NP_001332295.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGX0, Q9FKP6
      Conserved Domains (2) summary
      cd00030
      Location:389 → 437
      C2; C2 domain
      pfam01442
      Location:909 → 1031
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    3. NM_001345682.1 → NP_001332292.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIN1, A0A1P8BGK1

    4. NM_125942.5 → NP_201347.2  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201347.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHB0, A0A654GEC2, Q8RY57
      Conserved Domains (1) summary
      pfam01442
      Location:867 → 990
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    5. NM_001203693.1 → NP_001190622.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190622.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGX0, F4KHY8
      Conserved Domains (1) summary
      pfam01442
      Location:943 → 1065
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    6. NM_001345683.1 → NP_001332293.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGX0, Q9FKP6
      Conserved Domains (2) summary
      cd00030
      Location:389 → 437
      C2; C2 domain
      pfam01442
      Location:909 → 1031
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    7. NM_001345685.1 → NP_001332294.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHB0, A0A654GEC2, Q8RY57
      Conserved Domains (1) summary
      pfam01442
      Location:867 → 990
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    8. NM_001345684.1 → NP_001332296.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGX0, Q9FKP6
      Conserved Domains (2) summary
      cd00030
      Location:389 → 437
      C2; C2 domain
      pfam01442
      Location:909 → 1031
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    9. NM_001345686.1 → NP_001332297.1  uncharacterized protein AT5G65440 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHB0, A0A654GEC2, Q8RY57
      Conserved Domains (1) summary
      pfam01442
      Location:867 → 990
      Apolipoprotein; Apolipoprotein A1/A4/E domain
    Nucleotide Protein
    Heading Accession and Version

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