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    SPT42 SPT4 homolog 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836487, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SPT42
    Official Full Name
    SPT4 homolog 2
    Primary source
    TAIR:AT5G63670
    Locus tag
    AT5G63670
    See related
    Araport:AT5G63670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBK5.15; MBK5_15; SPT4 homolog 2; SPT4-2
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    Genomic context

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    See SPT42 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25487927..25489600)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ENTH/VHS/GAT family protein Neighboring gene SNF1-related protein kinase 2.5 Neighboring gene Scorpion toxin-like knottin superfamily protein Neighboring gene Pyruvate kinase family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The zinc-finger protein SPT4 interacts with SPT5L/KTF1 and modulates transcriptional silencing in Arabidopsis. Köllen K, et al. FEBS Lett, 2015 Oct 24. PMID 26424658
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203680.1
    NM_125762.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SPT4 homolog 2
    NP_001190609.1
    • SPT4 homolog 2 (SPT42); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1).
    NP_568976.1
    • SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25487927..25489600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203680.1 → NP_001190609.1  SPT4 homolog 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190609.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KAT2
      Conserved Domains (1) summary
      cd07973
      Location:14 → 79
      Spt4; Transcription elongation factor Spt4

    2. NM_125762.4 → NP_568976.1  SPT4 homolog 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568976.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94C60, Q9FFP7
      UniProtKB/TrEMBL
      A0A178UQF3, A0A5S9YH84, A0A654G010
      Conserved Domains (1) summary
      cd07973
      Location:14 → 110
      Spt4; Transcription elongation factor Spt4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94C60.1

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