U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    FP3 farnesylated protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836472, updated on 15-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    FP3
    Gene description
    farnesylated protein 3
    Primary source
    Araport:AT5G63530
    Locus tag
    AT5G63530
    See related
    TAIR:AT5G63530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3; ATFP3; farnesylated protein 3; MLE2.16; MLE2_16
    Summary
    Farnesylated protein that binds metals.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FP3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25432890..25435834)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene gamma carbonic anhydrase like 1 Neighboring gene F-box/LRR protein Neighboring gene ncRNA Neighboring gene recQ-mediated instability protein (DUF1767)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new class of proteins capable of binding transition metals. Dykema PE, et al. Plant Mol Biol, 1999 Sep. PMID 10561075
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001085321.2
    NM_125748.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transition metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    farnesylated protein 3
    NP_001078790.1
    • farnesylated protein 3 (FP3); FUNCTIONS IN: transition metal ion binding, metal ion binding; INVOLVED IN: cellular transition metal ion homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 5078 Blast hits to 3127 proteins in 372 species: Archae - 4; Bacteria - 284; Metazoa - 1364; Fungi - 240; Plants - 2332; Viruses - 113; Other Eukaryotes - 741 (source: NCBI BLink).
    NP_568974.1
    • farnesylated protein 3 (FP3); FUNCTIONS IN: transition metal ion binding, metal ion binding; INVOLVED IN: cellular transition metal ion homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25432890..25435834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125748.3 → NP_568974.1  farnesylated protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568974.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5D3, Q9FMU9, Q9ZRE7
      UniProtKB/TrEMBL
      A0A178UNW0, A0A5S9YHV8, A0A654GDU4
      Conserved Domains (1) summary
      cd00371
      Location:81 → 136
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

    2. NM_001085321.2 → NP_001078790.1  farnesylated protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078790.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNW0
      Conserved Domains (1) summary
      cd00371
      Location:66 → 121
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5D3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools