U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836447, updated on 18-Sep-2024

    Summary

    Official Full Name
    RPM1-interacting protein 4 (RIN4) family protein
    Primary source
    TAIR:AT5G63270
    Locus tag
    AT5G63270
    See related
    Araport:AT5G63270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDC12.24; MDC12_24
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25365230..25366012, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene C2H2-like zinc finger protein Neighboring gene Radical SAM superfamily protein Neighboring gene ncRNA

    General protein information

    Preferred Names
    RPM1-interacting protein 4 (RIN4) family protein
    NP_201132.1
    • RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT3G48450.1); Has 282 Blast hits to 281 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25365230..25366012 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125722.2NP_201132.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201132.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMP4, Q9FMJ6
      Conserved Domains (1) summary
      pfam05627
      Location:439
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr