U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SLK2 SEUSS-like 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836329, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SLK2
    Official Full Name
    SEUSS-like 2
    Primary source
    TAIR:AT5G62090
    Locus tag
    AT5G62090
    See related
    Araport:AT5G62090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MTG10.12; MTG10_12; SEUSS-like 2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SLK2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (24934962..24939239, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene IQ-domain 23 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene BCL-2-associated athanogene 2 Neighboring gene Homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. Lee JE, et al. Plant J, 2014 Oct. PMID 25060324
    2. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Geng X, et al. Plant J, 2017 May. PMID 28181322
    3. SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis. Bao F, et al. Plant Physiol, 2010 Feb. PMID 20007451, Free PMC Article
    4. Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis. Shrestha B, et al. BMC Plant Biol, 2014 Feb 24. PMID 24564815, Free PMC Article
    5. YABBYs and the transcriptional corepressors LEUNIG and LEUNIG_HOMOLOG maintain leaf polarity and meristem activity in Arabidopsis. Stahle MI, et al. Plant Cell, 2009 Oct. PMID 19837869, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SEU and SLK2 function redundantly to promote embryonic shoot development and likely act through a non-cell autonomous pathway to promote KNOXI activity.
      Title: SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
    2. that SLK1, SLK2 and LUH form a co-repressor complex.
      Title: Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis.
    3. SLK2 functions during outer integument development, at least when SEU and SLK1 activities are compromised. [SLK2]
      Title: SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_125602.3
    NM_180914.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within gynoecium development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant ovule development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to aluminum ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SEUSS-like 2
    NP_201015.1
    • SEUSS-like 2 (SLK2); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 38958 Blast hits to 16422 proteins in 905 species: Archae - 6; Bacteria - 1880; Metazoa - 14538; Fungi - 4050; Plants - 2632; Viruses - 363; Other Eukaryotes - 15489 (source: NCBI BLink).
    NP_851245.1
    • SEUSS-like 2 (SLK2); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 38958 Blast hits to 16422 proteins in 905 species: Archae - 6; Bacteria - 1880; Metazoa - 14538; Fungi - 4050; Plants - 2632; Viruses - 363; Other Eukaryotes - 15489 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24934962..24939239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345520.1 → NP_001332402.1  SEUSS-like 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BP0, Q9FIS9
      UniProtKB/TrEMBL
      A0A178UF78, A0A5S9YG89, A0A654GDD6
      Conserved Domains (1) summary
      pfam01803
      Location:295 → 555
      LIM_bind; LIM-domain binding protein

    2. NM_125602.3 → NP_201015.1  SEUSS-like 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201015.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BP0, Q9FIS9
      UniProtKB/TrEMBL
      A0A178UF78, A0A5S9YG89, A0A654GDD6
      Conserved Domains (1) summary
      pfam01803
      Location:295 → 555
      LIM_bind; LIM-domain binding protein

    3. NM_180914.2 → NP_851245.1  SEUSS-like 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851245.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BP0, Q9FIS9
      UniProtKB/TrEMBL
      A0A178UF78, A0A5S9YG89, A0A654GDD6
      Conserved Domains (1) summary
      pfam01803
      Location:295 → 555
      LIM_bind; LIM-domain binding protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94BP0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools