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    Calcium-binding endonuclease/exonuclease/phosphatase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835500, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-binding endonuclease/exonuclease/phosphatase family
    Primary source
    TAIR:AT5G54130
    Locus tag
    AT5G54130
    See related
    Araport:AT5G54130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (21962570..21965623)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene membrane-associated mannitol-induced Neighboring gene IAA-leucine-resistant (ILR1)-like 3 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085285.2
    NM_001125960.1
    NM_001125961.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-binding endonuclease/exonuclease/phosphatase family
    NP_001078754.1
    • Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    NP_001119432.1
    • Calcium-binding endonuclease/exonuclease/phosphatase family; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119433.1
    • Calcium-binding endonuclease/exonuclease/phosphatase family; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21962570..21965623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085285.2 → NP_001078754.1  Calcium-binding endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078754.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA85, A0A178UBH5, Q8GUH8
      Conserved Domains (2) summary
      cl00490
      Location:32 → 247
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
      cl08302
      Location:299 → 365
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. NM_001125961.1 → NP_001119433.1  Calcium-binding endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119433.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JYU5
      Conserved Domains (1) summary
      cl00490
      Location:32 → 247
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. NM_001125960.1 → NP_001119432.1  Calcium-binding endonuclease/exonuclease/phosphatase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119432.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H5H6
      Conserved Domains (1) summary
      pfam03372
      Location:60 → 263
      Exo_endo_phos; Endonuclease/Exonuclease/phosphatase family
    Nucleotide Protein
    Heading Accession and Version

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