[Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Primary source: TAIR:AT5G51590
Locus tag: AT5G51590
See related: Araport:AT5G51590
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AHL4; AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4; K17N15.14; K17N15_14
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

Location:: chromosome: 5

Exon count:: 5

Sequence:: Chromosome: 5; NC_003076.8 (20956510..20959409, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The cell-to-cell communication mediated by mobile AHL3 and AHL4 is critical for establishing the boundary between the procambium and xylem.
Title: Cell-to-cell movement of two interacting AT-hook factors in Arabidopsis root vascular tissue patterning.

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Markers

ha2919 (e-PCR)
- UniSTS:515610

Homology

Orthologs from OrthoDB

NM_124538.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables minor groove of adenine-thymine-rich DNA binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in xylem and phloem pattern formation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within xylem development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: AT hook motif DNA-binding family protein

NP_199972.1

AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G25320.1); Has 1243 Blast hits to 1178 proteins in 110 species: Archae - 0; Bacteria - 11; Metazoa - 305; Fungi - 62; Plants - 787; Viruses - 15; Other Eukaryotes - 63 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

20956510..20959409 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_124538.4 → NP_199972.1 AT hook motif DNA-binding family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_199972.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9FHM5

UniProtKB/TrEMBL

A0A178UK27

Conserved Domains (1) summary

pfam03479
Location:181 → 294

DUF296; Domain of unknown function (DUF296)