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    RGPR-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834798, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RGPR-like protein
    Primary source
    TAIR:AT5G47480
    Locus tag
    AT5G47480
    See related
    Araport:AT5G47480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAG5; MAIGO 5; MNJ7.7; MNJ7_7
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (19257027..19263425)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Nodulin MtN21 /EamA-like transporter family protein Neighboring gene RGPR-like protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis. Takagi J, et al. Plant Cell, 2013 Nov. PMID 24280388, Free PMC Article
    2. SINAT E3 Ubiquitin Ligases Mediate FREE1 and VPS23A Degradation to Modulate Abscisic Acid Signaling. Xia FN, et al. Plant Cell, 2020 Oct. PMID 32753431, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At5g47480 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis.
      Title: MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_124121.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII vesicle coating IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RGPR-like protein
    NP_199559.1
    • RGPR-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RGPR-related (TAIR:AT5G47490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19257027..19263425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344727.1 → NP_001331519.1  RGPR-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BE45

    2. NM_124121.3 → NP_199559.1  RGPR-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199559.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGK9
      UniProtKB/TrEMBL
      A0A5S9YCZ8
      Conserved Domains (2) summary
      cd09233
      Location:593 → 943
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      pfam12932
      Location:522 → 645
      Sec16; Vesicle coat trafficking protein Sec16 mid-region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGK9.1

    Gene LinkOut

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