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    RPS1 ribosomal protein S1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833138, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPS1
    Official Full Name
    ribosomal protein S1
    Primary source
    TAIR:AT5G30510
    Locus tag
    AT5G30510
    See related
    Araport:AT5G30510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARRPS1; plastid ribosomal protein S1; PRPS1; ribosomal protein S1
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    Genomic context

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    See RPS1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (11619000..11621298, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene craniofacial development-like protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis. Tadini L, et al. Plant Physiol, 2016 Mar. PMID 26823545, Free PMC Article
    2. Breaking restricted taxonomic functionality by dual resistance genes. Narusaka M, et al. Plant Signal Behav, 2013 Jun. PMID 23518587, Free PMC Article
    3. Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis. Yu HD, et al. PLoS Genet, 2012. PMID 22570631, Free PMC Article
    4. Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens. Narusaka M, et al. PLoS One, 2013. PMID 23437080, Free PMC Article
    5. The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts. Chi W, et al. Plant Physiol, 2012 Feb. PMID 22170977, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that the the genomes uncoupled 1 (gun1) mutation genetically interacts with mutations of genes for the chloroplast ribosomal proteins S1 (PRPS1).
      Title: GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis.
    2. properly function in two other Brassicaceae, properly function for pathogen resistance in two other Brassicaceae, Brassica rapa and B. napus, but also in two Solanaceae, Nicotiana benthamiana and tomato (Solanum lycopersicum)
      Title: Breaking restricted taxonomic functionality by dual resistance genes.
    3. A pair of Arabidopsis nucleotide binding and leucine rich repeat-type R genes, RPS4 and RRS1, properly function in two other Brassicaceae, Brassica rapa and Brassica napus, but also in two Solanaceae, Nicotiana benthamiana and tomato.
      Title: Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens.
    4. We have established a previously unrecognized molecular connection between the downregulation of RPS1 expression in chloroplast and the activation of HsfA2-dependent heat-responsive genes in nucleus, which is required for heat tolerance in higher plants
      Title: Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_180572.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein S1
    NP_850903.1
    • ribosomal protein S1 (RPS1); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT1G71720.1); Has 27453 Blast hits to 18967 proteins in 2720 species: Archae - 77; Bacteria - 20681; Metazoa - 178; Fungi - 177; Plants - 343; Viruses - 0; Other Eukaryotes - 5997 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      11619000..11621298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180572.2 → NP_850903.1  ribosomal protein S1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850903.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93VC7
      UniProtKB/TrEMBL
      A0A178ULV9, A0A5S9XS40, C0Z2U7
      Conserved Domains (1) summary
      PRK07400
      Location:71 → 367
      PRK07400; 30S ribosomal protein S1; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VC7.1

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