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    MYB3R-4 myb domain protein 3r-4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831023, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB3R-4
    Official Full Name
    myb domain protein 3r-4
    Primary source
    TAIR:AT5G11510
    Locus tag
    AT5G11510
    See related
    Araport:AT5G11510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB3R4; F15N18.100; F15N18_100; myb domain protein 3r-4; myb domain protein 3R4
    Summary
    Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4. Functions in powdery mildew induced host endoreduplication at the site of infection.
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    Genomic context

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    See MYB3R-4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (3679748..3684884)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene adaptin family protein Neighboring gene coiled-coil protein Neighboring gene aspartate aminotransferase 3 Neighboring gene embryonic flower 1 (EMF1)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular mechanism of cytokinin-activated cell division in Arabidopsis. Yang W, et al. Science, 2021 Mar 26. PMID 33632892, Free PMC Article
    2. Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana. Saito T, et al. Plant Signal Behav, 2015. PMID 25806785, Free PMC Article
    3. Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators. Chandran D, et al. Proc Natl Acad Sci U S A, 2010 Jan 5. PMID 20018666, Free PMC Article
    4. Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis. Haga N, et al. Plant Physiol, 2011 Oct. PMID 21862669, Free PMC Article
    5. R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana. Haga N, et al. Development, 2007 Mar. PMID 17287251

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Molecular mechanism of cytokinin-activated cell division in Arabidopsis.
      Title: Molecular mechanism of cytokinin-activated cell division in Arabidopsis.
    2. MYB3R1 and MYB3R4 may have diverse roles during plant development by regulating G2/M-specific genes with various functions as well as genes possibly unrelated to the cell cycle.
      Title: Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis.
    3. Our results suggest that a pair of structurally related myb3r1 myb3r4 transcription factors may positively regulate cytokinesis mainly through transcriptional activation of the KN gene.
      Title: R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343196.1
    NM_001343198.1
    NM_001343199.1
    NM_121189.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of cellular response to caffeine IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA endoreduplication IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of cytokinesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of cytokinesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in spindle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myb domain protein 3r-4
    NP_001318541.1
    • myb domain protein 3r-4 (MYB3R-4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.1); Has 13831 Blast hits to 8419 proteins in 581 species: Archae - 0; Bacteria - 44; Metazoa - 1293; Fungi - 976; Plants - 8377; Viruses - 6; Other Eukaryotes - 3135 (source: NCBI BLink).
    NP_568249.1
    • myb domain protein 3r-4 (MYB3R-4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3679748..3684884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343197.1 → NP_001330337.1  myb domain protein 3r-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56WW6, Q94FL9, Q9LYE0
      UniProtKB/TrEMBL
      A0A178UE76, A0A5S9Y3B7
      Conserved Domains (3) summary
      pfam00249
      Location:29 → 75
      Myb_DNA-binding; Myb-like DNA-binding domain
      cl00224
      Location:861 → 927
      PLPDE_IV; PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate ...
      cl28544
      Location:81 → 182
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

    2. NM_121189.4 → NP_568249.1  myb domain protein 3r-4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568249.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56WW6, Q94FL9, Q9LYE0
      UniProtKB/TrEMBL
      A0A178UE76, A0A5S9Y3B7
      Conserved Domains (3) summary
      pfam00249
      Location:29 → 75
      Myb_DNA-binding; Myb-like DNA-binding domain
      cl00224
      Location:861 → 927
      PLPDE_IV; PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate ...
      cl28544
      Location:81 → 182
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

    3. NM_001343196.1 → NP_001318541.1  myb domain protein 3r-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JXW4

    4. NM_001343198.1 → NP_001330338.1  myb domain protein 3r-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56WW6, Q94FL9, Q9LYE0
      UniProtKB/TrEMBL
      A0A178UE76, A0A5S9Y3B7
      Conserved Domains (3) summary
      pfam00249
      Location:29 → 75
      Myb_DNA-binding; Myb-like DNA-binding domain
      cl00224
      Location:861 → 927
      PLPDE_IV; PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate ...
      cl28544
      Location:81 → 182
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

    5. NM_001343199.1 → NP_001330339.1  myb domain protein 3r-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAI6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94FL9.1

    Gene LinkOut

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