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    Ribosomal S17 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830359, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal S17 family protein
    Primary source
    TAIR:AT5G04800
    Locus tag
    AT5G04800
    See related
    Araport:AT5G04800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUK11.13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (1387909..1389887)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene ovate family protein 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036757.1
    NM_001036758.1
    NM_120562.3
    NM_180434.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal S17 family protein
    NP_001031834.1
    • Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G04390.1); Has 1004 Blast hits to 1004 proteins in 349 species: Archae - 194; Bacteria - 0; Metazoa - 361; Fungi - 144; Plants - 127; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
    NP_001031835.1
    • Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G04390.1); Has 1004 Blast hits to 1004 proteins in 349 species: Archae - 194; Bacteria - 0; Metazoa - 361; Fungi - 144; Plants - 127; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
    NP_196100.1
    • Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G04390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850765.1
    • Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G04390.1); Has 1004 Blast hits to 1004 proteins in 349 species: Archae - 194; Bacteria - 0; Metazoa - 361; Fungi - 144; Plants - 127; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1387909..1389887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180434.3 → NP_850765.1  Ribosomal S17 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850765.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAE8, Q9LZ17
      UniProtKB/TrEMBL
      A0A178UQ88, A0A384K9G9, B9DGM0
      Conserved Domains (1) summary
      pfam00833
      Location:1 → 122
      Ribosomal_S17e; Ribosomal S17

    2. NM_120562.3 → NP_196100.1  Ribosomal S17 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196100.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAE8, Q9LZ17
      UniProtKB/TrEMBL
      A0A178UQ88, A0A384K9G9, B9DGM0
      Conserved Domains (1) summary
      pfam00833
      Location:1 → 122
      Ribosomal_S17e; Ribosomal S17

    3. NM_001036757.1 → NP_001031834.1  Ribosomal S17 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031834.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAE8, Q9LZ17
      UniProtKB/TrEMBL
      A0A178UQ88, A0A384K9G9, B9DGM0
      Conserved Domains (1) summary
      pfam00833
      Location:1 → 122
      Ribosomal_S17e; Ribosomal S17

    4. NM_001036758.1 → NP_001031835.1  Ribosomal S17 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031835.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAE8, Q9LZ17
      UniProtKB/TrEMBL
      A0A178UQ88, A0A384K9G9, B9DGM0
      Conserved Domains (1) summary
      pfam00833
      Location:1 → 122
      Ribosomal_S17e; Ribosomal S17
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZ17.3

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