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    VHA-C3 vacuolar-type H[+]-ATPase C3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830047, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VHA-C3
    Official Full Name
    vacuolar-type H[+]-ATPase C3
    Primary source
    TAIR:AT4G38920
    Locus tag
    AT4G38920
    See related
    Araport:AT4G38920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATVHA-C3; AVA-P3; F19H22.20; vacuolar-type H(+)-ATPase C3
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    Genomic context

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    See VHA-C3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (18147027..18149315)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene uncharacterized protein Neighboring gene basic pentacysteine 5 Neighboring gene Ubiquitin fusion degradation UFD1 family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001342512.1
    NM_120052.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    vacuolar-type H[+]-ATPase C3
    NP_195603.1
    • vacuolar-type H(+)-ATPase C3 (VHA-C3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT4G34720.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18147027..18149315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120052.3 → NP_195603.1  vacuolar-type H[+]-ATPase C3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195603.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DH92, P0DH93, P0DH94, P59227, Q39037, Q39038, Q39039, Q42424, Q6IDA4, Q96298
      UniProtKB/TrEMBL
      A0A178VXD8, A0A5S9WYP5
      Conserved Domains (2) summary
      TIGR01100
      Location:12 → 120
      V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
      cd18176
      Location:88 → 155
      ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins

    2. NM_001342512.1 → NP_001329869.1  vacuolar-type H[+]-ATPase C3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B937
      Conserved Domains (2) summary
      cd18176
      Location:62 → 129
      ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins
      cl00466
      Location:1 → 94
      ATP-synt_C; ATP synthase subunit C
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DH92.1
    P0DH93.1
    P0DH94.1

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials