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    MRL1 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829635, updated on 15-Oct-2023

    Summary

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    Gene symbol
    MRL1
    Gene description
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    Araport:AT4G34830
    Locus tag
    AT4G34830
    See related
    TAIR:AT4G34830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I11.70; F11I11_70; MATURATION OF RBCL 1; PDE346; PIGMENT DEFECTIVE 346
    Summary
    Encodes MRL1, a conserved pentatricopeptide repeat protein, required for stabilization of rbcL mRNA.
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    Genomic context

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    See MRL1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Sequence:
    Chromosome: 4; NC_003075.7 (16599597..16606135, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene Phosphorylase superfamily protein Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene Plant neutral invertase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis. Johnson X, et al. Plant Cell, 2010 Jan. PMID 20097872, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MRL1 controls the accumulation of the rbcL mRNA at a posttranscriptional stage and, hence, Rubisco biogenesis. [MRL1]
      Title: MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_119649.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_195209.2
    • MATURATION OF RBCL 1 (MRL1); INVOLVED IN: mRNA stabilization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 45662 Blast hits to 13867 proteins in 283 species: Archae - 3; Bacteria - 43; Metazoa - 608; Fungi - 635; Plants - 42548; Viruses - 0; Other Eukaryotes - 1825 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16599597..16606135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119649.5 → NP_195209.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195209.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLC6, Q0WVK9, Q6NLP9, Q9SW51, Q9SW52
      UniProtKB/TrEMBL
      A0A178V2I9, A0A5S9XZE0, A0A654FVK0, A0A7G2F344
      Conserved Domains (4) summary
      PLN03218
      Location:1 → 1089
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:505 → 536
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:505 → 531
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:566 → 599
      PPR_1; PPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WLC6.2

    Gene LinkOut

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