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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829246, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT4G31180
    Locus tag
    AT4G31180
    See related
    TAIR:AT4G31180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6E21.100; F6E21_100; IBI1; impaired in BABA-induced disease immunity 1
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (15155751..15159594)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene endonuclease V family protein Neighboring gene DDB1-CUL4 associated factor 1 Neighboring gene Protein kinase superfamily protein Neighboring gene miscRNA Neighboring gene oxidoreductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant perception of β-aminobutyric acid is mediated by an aspartyl-tRNA synthetase. Luna E, et al. Nat Chem Biol, 2014 Jun. PMID 24776930, Free PMC Article
    2. Arabidopsis glutaredoxin S17 and its partner, the nuclear factor Y subunit C11/negative cofactor 2α, contribute to maintenance of the shoot apical meristem under long-day photoperiod. Knuesting J, et al. Plant Physiol, 2015 Apr. PMID 25699589, Free PMC Article
    3. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119268.4
    NM_179227.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aspartate-tRNA ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aspartyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Class II aminoacyl-tRNA and biotin synthetases superfamily protein
    NP_194847.3
    • Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aminoacyl-tRNA ligase activity, aspartate-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT4G26870.1); Has 27000 Blast hits to 21362 proteins in 2984 species: Archae - 448; Bacteria - 18821; Metazoa - 751; Fungi - 935; Plants - 402; Viruses - 0; Other Eukaryotes - 5643 (source: NCBI BLink).
    NP_849558.1
    • Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT4G26870.1); Has 27000 Blast hits to 21362 proteins in 2984 species: Archae - 448; Bacteria - 18821; Metazoa - 751; Fungi - 935; Plants - 402; Viruses - 0; Other Eukaryotes - 5643 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15155751..15159594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179227.3 → NP_849558.1  Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849558.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYA0, Q9M084
      UniProtKB/TrEMBL
      A0A178V0N3, A0A5S9XXI6, A0A654FUH6
      Conserved Domains (1) summary
      PLN02850
      Location:12 → 558
      PLN02850; aspartate-tRNA ligase

    2. NM_119268.4 → NP_194847.3  Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194847.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYA0, Q9M084
      UniProtKB/TrEMBL
      A0A178V0N3, A0A5S9XXI6, A0A654FUH6
      Conserved Domains (1) summary
      PLN02850
      Location:12 → 558
      PLN02850; aspartate-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M084.1

    Gene LinkOut

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