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    ZFWD1 zinc finger WD40 repeat protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828649, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ZFWD1
    Official Full Name
    zinc finger WD40 repeat protein 1
    Primary source
    TAIR:AT4G25440
    Locus tag
    AT4G25440
    See related
    Araport:AT4G25440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30C3.6; zinc finger WD40 repeat protein 1
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    Genomic context

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    See ZFWD1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (13006690..13009618, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 10 Neighboring gene tRNA-Lys Neighboring gene non-intrinsic ABC protein 8 Neighboring gene C-repeat/DRE binding factor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341743.1
    NM_001341744.1
    NM_118676.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger WD40 repeat protein 1
    NP_194274.2
    • zinc finger WD40 repeat protein 1 (ZFWD1); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1); Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44; Bacteria - 4332; Metazoa - 10522; Fungi - 6455; Plants - 3358; Viruses - 0; Other Eukaryotes - 3645 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13006690..13009618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118676.4 → NP_194274.2  zinc finger WD40 repeat protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194274.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNZ2
      UniProtKB/TrEMBL
      A0A178V112, A0A5S9XVQ3, A0A654FSW0
      Conserved Domains (3) summary
      sd00039
      Location:148 → 186
      7WD40; WD40 repeat [structural motif]
      pfam18345
      Location:108 → 126
      zf_CCCH_4; Zinc finger domain
      cl29593
      Location:136 → 420
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_001341743.1 → NP_001328956.1  zinc finger WD40 repeat protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNZ2
      UniProtKB/TrEMBL
      A0A178V112, A0A5S9XVQ3, A0A654FSW0
      Conserved Domains (3) summary
      sd00039
      Location:148 → 186
      7WD40; WD40 repeat [structural motif]
      pfam18345
      Location:108 → 126
      zf_CCCH_4; Zinc finger domain
      cl29593
      Location:136 → 420
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_001341744.1 → NP_001328957.1  zinc finger WD40 repeat protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNZ2
      UniProtKB/TrEMBL
      A0A178V112, A0A5S9XVQ3, A0A654FSW0
      Conserved Domains (3) summary
      sd00039
      Location:148 → 186
      7WD40; WD40 repeat [structural motif]
      pfam18345
      Location:108 → 126
      zf_CCCH_4; Zinc finger domain
      cl29593
      Location:136 → 420
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNZ2.1

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