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    Spc97/Spc98 family of spindle pole body (SBP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828033, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Spc97/Spc98 family of spindle pole body (SBP) component
    Primary source
    TAIR:AT4G00695
    Locus tag
    AT4G00695
    See related
    Araport:AT4G00695
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (283592..285975)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNAhelicase-like 8 Neighboring gene Remorin family protein Neighboring gene actin depolymerizing factor 8 Neighboring gene UB-like protease 1B Neighboring gene ncRNA Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Neighboring gene BR-signaling kinase 3 Neighboring gene shaggy-like protein kinase 32

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125434.1
    NM_148182.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Spc97/Spc98 family of spindle pole body (SBP) component
    NP_001118906.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190646.1
    • FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3).
    NP_680548.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      283592..285975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203717.2 → NP_001190646.1  Spc97/Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190646.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F0B5, F4JHF7

    2. NM_001340262.1 → NP_001329646.1  Spc97/Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F0B5, F4JHF7

    3. NM_001340263.1 → NP_001329645.1  Spc97/Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT51, A0A384KS60, A0A7G2F0B5, Q58FV2

    4. NM_148182.3 → NP_680548.2  Spc97/Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680548.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT51, A0A384KS60, A0A7G2F0B5, Q58FV2

    5. NM_001125434.1 → NP_001118906.1  Spc97/Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118906.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT51, A0A384KS60, A0A7G2F0B5, Q58FV2
    Nucleotide Protein
    Heading Accession and Version

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