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    F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827929, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    TAIR:AT4G00315
    Locus tag
    AT4G00315
    See related
    Araport:AT4G00315
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (137404..138888)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Putative membrane lipoprotein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A photo-responsive F-box protein FOF2 regulates floral initiation by promoting FLC expression in Arabidopsis. He R, et al. Plant J, 2017 Sep. PMID 28608936
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of long-day photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of short-day photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_849271.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G55660.1); Has 2332 Blast hits to 2280 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 4; Plants - 2320; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      137404..138888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_178940.1 → NP_849271.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849271.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EAE5
      UniProtKB/TrEMBL
      A0A178UUX2, A0A5S9XNU1
      Conserved Domains (4) summary
      smart00579
      Location:368 → 441
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:135 → 156
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:156 → 181
      LRR_2; Leucine Rich Repeat
      pfam00646
      Location:5 → 46
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EAE5.1

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