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    oxidoreductase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827783, updated on 18-Sep-2024

    Summary

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    Official Full Name
    oxidoreductase
    Primary source
    TAIR:AT4G20350
    Locus tag
    AT4G20350
    See related
    Araport:AT4G20350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9F13.6; F9F13_6
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (10988037..10989947)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene ncRNA Neighboring gene RAB GTPase homolog E1B Neighboring gene pseudo Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Characterization of a Putative RNA Demethylase ALKBH6 in Arabidopsis Growth and Abiotic Stress Responses. Huong TT, et al. Int J Mol Sci, 2020 Sep 13. PMID 32933187, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341426.1
    NM_001341427.1
    NM_001341428.1
    NM_118154.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables C5-methylcytidine-containing RNA reader activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables N6-methyladenosine-containing RNA reader activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of developmental vegetative growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of developmental vegetative growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    oxidoreductase
    NP_001190780.1
    • oxidoreductases; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123).
    NP_001320009.1
    • oxidoreductases; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); Has 320 Blast hits to 320 proteins in 141 species: Archae - 0; Bacteria - 19; Metazoa - 112; Fungi - 69; Plants - 54; Viruses - 3; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10988037..10989947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203851.2 → NP_001190780.1  oxidoreductase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190780.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94F42, Q9SUP1
      UniProtKB/TrEMBL
      A0A654FR54
      Conserved Domains (1) summary
      cl21496
      Location:16 → 141
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    2. NM_001341429.1 → NP_001328793.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5R1, A0A7G2EZP9

    3. NM_001341430.1 → NP_001328792.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5R1, A0A7G2EZP9

    4. NM_001341431.1 → NP_001328791.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JUV5

    5. NM_001341432.1 → NP_001328788.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94F42, Q9SUP1
      UniProtKB/TrEMBL
      A0A654FR54

    6. NM_001341433.1 → NP_001328790.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Q3, A0A7G2F436

    7. NM_001341434.1 → NP_001328789.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5R1, A0A7G2EZP9

    8. NM_001341426.1 → NP_001320009.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JUV5

    9. NM_118154.4 → NP_567598.2  oxidoreductase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567598.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JUV5
      Conserved Domains (1) summary
      cl21496
      Location:11 → 86
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    10. NM_001341427.1 → NP_001328795.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Q3, A0A7G2F436

    11. NM_001341428.1 → NP_001328794.1  oxidoreductase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94F42
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUP1.1

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