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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827730, updated on 22-Aug-2024

    Summary

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    Primary source
    TAIR:AT4G19860
    Locus tag
    AT4G19860
    See related
    Araport:AT4G19860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16H5.220; T16H5_220
    Summary
    Encodes a cytosolic calcium-independent phospholipase A.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (10777512..10780470, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase family protein with chitinase insertion domain-containing protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene phloem protein 2-A1 Neighboring gene lectin-like protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of an LCAT-like Arabidopsis thaliana gene encoding a novel phospholipase A. Chen G, et al. FEBS Lett, 2012 Feb 17. PMID 22245677
    2. Cloning and functional characterization of a phospholipid:diacylglycerol acyltransferase from Arabidopsis. Ståhl U, et al. Plant Physiol, 2004 Jul. PMID 15247387, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_118106.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within phospholipid catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha/beta-Hydrolases superfamily protein
    NP_193721.2
    • alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: lecithin:cholesterol acyltransferase 3 (TAIR:AT3G03310.1); Has 596 Blast hits to 589 proteins in 168 species: Archae - 2; Bacteria - 89; Metazoa - 166; Fungi - 41; Plants - 181; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10777512..10780470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118106.4 → NP_193721.2  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193721.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81867, Q71N54
      UniProtKB/TrEMBL
      A0A5S9XU30
      Conserved Domains (1) summary
      PLN02733
      Location:13 → 454
      PLN02733; phosphatidylcholine-sterol O-acyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q71N54.1

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