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    Dynein light chain type 1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827275, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Dynein light chain type 1 family protein
    Primary source
    TAIR:AT4G15930
    Locus tag
    AT4G15930
    See related
    Araport:AT4G15930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4005W; FCAALL.238
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (9036169..9038075)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene drought-induced 21 Neighboring gene Nodulin MtN3 family protein Neighboring gene Fumarylacetoacetate (FAA) hydrolase family Neighboring gene RNA polymerase II, Rpb4, core protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleoporin MOS7/Nup88 is required for mitosis in gametogenesis and seed development in Arabidopsis. Park GT, et al. Proc Natl Acad Sci U S A, 2014 Dec 23. PMID 25489100, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117685.7

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Dynein light chain type 1 family protein
    NP_193328.4
    • Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2, conserved site (InterPro:IPR019763), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT5G20110.1); Has 1403 Blast hits to 1403 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 108; Plants - 264; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9036169..9038075
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341079.1 → NP_001329326.1  Dynein light chain type 1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7F1

    2. NM_117685.7 → NP_193328.4  Dynein light chain type 1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193328.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UW91, O23442, Q84VW0
      Conserved Domains (1) summary
      cd21452
      Location:39 → 122
      DLC-like_DYNLL1_DYNLL2; dynein light chain (DLC)-like domain found in the cytoplasmic dynein light chain 1 (DYNLL1) family
    Nucleotide Protein
    Heading Accession and Version

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