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    UBQ10 polyubiquitin 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825880, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBQ10
    Official Full Name
    polyubiquitin 10
    Primary source
    TAIR:AT4G05320
    Locus tag
    AT4G05320
    See related
    Araport:AT4G05320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C17L7.240; C17L7_240; polyubiquitin 10; UBI10; ubiquitin 10
    Summary
    One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
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    Genomic context

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    See UBQ10 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (2717977..2720308)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ubiquitin-like superfamily protein Neighboring gene ARF-GAP domain 13 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis. Rose AB. Plant J, 2004 Dec. PMID 15546357
    2. Lysine Residues Are Not Required for Proteasome-Mediated Proteolysis of the Auxin/Indole Acidic Acid Protein IAA1. Gilkerson J, et al. Plant Physiol, 2015 Jun. PMID 25888615, Free PMC Article
    3. E3-independent ubiquitination of AtMAPR/MSBP1. Kao AL, et al. Phytochemistry, 2012 Jun. PMID 22513011
    4. Modulation of phototropic responsiveness in Arabidopsis through ubiquitination of phototropin 1 by the CUL3-Ring E3 ubiquitin ligase CRL3(NPH3). Roberts D, et al. Plant Cell, 2011 Oct. PMID 21990941, Free PMC Article
    5. Auxin-induced, SCF(TIR1)-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Maraschin Fdos S, et al. Plant J, 2009 Jul. PMID 19309453

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The effect of intron location on mRNA accumulation in transgenic plants was found to decline with distance from the promoter.
      Title: The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084884.5
    NM_001340546.1
    NM_001340547.1
    NM_116771.5
    NM_178968.5
    NM_178969.6
    NM_178970.5
    NM_202787.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    polyubiquitin 10
    NP_001078353.4
    • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
    NP_567291.4
    • polyubiquitin 10 (UBQ10); INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
    NP_849299.4
    • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 39163 Blast hits to 7228 proteins in 725 species: Archae - 0; Bacteria - 126; Metazoa - 18170; Fungi - 4568; Plants - 8003; Viruses - 978; Other Eukaryotes - 7318 (source: NCBI BLink).
    NP_849300.4
    • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
    NP_849301.4
    • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 39163 Blast hits to 7228 proteins in 725 species: Archae - 0; Bacteria - 126; Metazoa - 18170; Fungi - 4568; Plants - 8003; Viruses - 978; Other Eukaryotes - 7318 (source: NCBI BLink).
    NP_974516.4
    • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G02890.4); Has 26633 Blast hits to 7217 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12516; Fungi - 3023; Plants - 5428; Viruses - 651; Other Eukaryotes - 4935 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2717977..2720308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_178968.5 → NP_849299.4  polyubiquitin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849299.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H159
      UniProtKB/TrEMBL
      A0A178V0T6, A0A5S9XPR1, Q9SAQ6
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    2. NM_001084884.5 → NP_001078353.4  polyubiquitin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078353.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V185, Q3EAA5, Q3EAA6, Q7EUR6, Q93ZJ0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    3. NM_001340546.1 → NP_001328999.1  polyubiquitin 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JGM3, Q8LDD7
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    4. NM_116771.5 → NP_567291.4  polyubiquitin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567291.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V185, Q3EAA5, Q3EAA6, Q7EUR6, Q93ZJ0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    5. NM_202787.4 → NP_974516.4  polyubiquitin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974516.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFN7, Q3E7T8
      UniProtKB/TrEMBL
      A0A178V886, A0A384KF74, J7FN14, O49976
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    6. NM_001340547.1 → NP_001328998.1  polyubiquitin 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFN7, Q3E7T8
      UniProtKB/TrEMBL
      A0A178V886, A0A384KF74, J7FN14, O49976
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    7. NM_178969.6 → NP_849300.4  polyubiquitin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849300.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V185, Q3EAA5, Q3EAA6, Q7EUR6, Q93ZJ0
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

    8. NM_178970.5 → NP_849301.4  polyubiquitin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849301.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H159
      UniProtKB/TrEMBL
      A0A178V0T6, A0A5S9XPR1, Q9SAQ6
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E7T8.2
    Q8H159.2

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials